Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QYN05_RS24225 Genome accession   NZ_CP129406
Coordinates   4570388..4571602 (+) Length   404 a.a.
NCBI ID   WP_034020539.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA272     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4565388..4576602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYN05_RS24210 - 4565981..4566574 (+) 594 WP_010793838.1 type II secretion system protein M -
  QYN05_RS24215 gspD 4566571..4568982 (+) 2412 WP_034020540.1 type II secretion system secretin GspD -
  QYN05_RS24220 pilB 4568979..4570388 (+) 1410 WP_003112722.1 type II secretion system ATPase GspE Machinery gene
  QYN05_RS24225 pilC 4570388..4571602 (+) 1215 WP_034020539.1 type II secretion system inner membrane protein GspF Machinery gene
  QYN05_RS24230 lapA 4572116..4573222 (+) 1107 WP_003112123.1 alkaline phosphatase LapA -
  QYN05_RS24235 - 4573308..4574420 (+) 1113 WP_003112720.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 43363.40 Da        Isoelectric Point: 9.3769

>NTDB_id=779068 QYN05_RS24225 WP_034020539.1 4570388..4571602(+) (pilC) [Pseudomonas aeruginosa strain PA272]
MQTFRYEAADAQGRIETGTLEADSQRGALGQLRARGLTPLEVREQAGGGAGQGAGALFAPRLSDGDLAWATRQLASLLAA
SLPLEAALSATLDQAERKHIAQTLSAVRSDVRGGMRLADALAARPRDFPEIYRALVAAGEESGDLAQVMERLADYIEERN
ALRGKILTAFIYPAVVGVVSIGIVIFLLGYVVPQVVSAFSQARQDLPALTRAMLQASDFVRAWGWLCAGAIGGAYWGWRL
YLRDPQARLGWHRRVLRLPLLGRFVLGVNTARFASTLAILGSAGIPLLRALDAARQTLANDCLAQAVEEATAQVREGVSL
ASALRTRQVFPPILTHLIASGEKTGALPPMLDRAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVLTIVMAVLMPIIEMN
QLVQ

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=779068 QYN05_RS24225 WP_034020539.1 4570388..4571602(+) (pilC) [Pseudomonas aeruginosa strain PA272]
ATGCAGACCTTCCGCTACGAAGCAGCCGACGCCCAGGGCCGGATCGAGACCGGCACCCTGGAGGCGGACAGCCAGCGTGG
CGCCCTCGGCCAACTGCGCGCCCGCGGCCTGACCCCGCTGGAGGTCCGCGAACAGGCTGGCGGCGGGGCCGGGCAAGGGG
CGGGCGCGCTGTTCGCCCCGCGCCTGTCCGACGGCGACCTGGCCTGGGCCACCCGCCAACTGGCCAGCCTGCTGGCCGCC
AGCCTGCCGCTGGAGGCGGCGCTGAGCGCCACCCTCGACCAGGCTGAGCGCAAGCACATCGCCCAGACCCTGAGCGCCGT
GCGCAGCGACGTGCGCGGCGGCATGCGCCTGGCCGACGCCCTTGCCGCACGGCCGCGGGACTTCCCGGAAATCTACCGGG
CGCTGGTGGCGGCGGGCGAGGAGTCCGGCGACCTGGCCCAGGTGATGGAGCGCCTGGCTGACTACATCGAGGAACGCAAC
GCCCTGCGCGGCAAGATCCTCACCGCGTTCATCTACCCGGCGGTGGTCGGCGTGGTCTCCATCGGCATCGTCATCTTCCT
CCTCGGCTACGTGGTGCCGCAGGTGGTCAGCGCCTTCTCCCAGGCGCGCCAGGACCTGCCGGCGCTGACCCGGGCGATGC
TCCAGGCCAGCGACTTCGTGCGCGCCTGGGGCTGGCTCTGCGCCGGCGCCATCGGTGGCGCTTACTGGGGCTGGCGCTTG
TACCTGCGCGACCCGCAGGCGCGGCTCGGCTGGCACCGGCGAGTGCTGCGCCTGCCTCTGCTCGGACGCTTCGTGCTCGG
GGTGAATACCGCGCGCTTCGCCTCCACCCTGGCGATCCTCGGCAGCGCCGGCATACCGCTGCTGCGCGCGCTCGATGCGG
CGCGCCAGACGCTGGCCAACGACTGCCTCGCGCAGGCGGTGGAGGAGGCCACCGCGCAGGTTCGCGAAGGTGTCTCGCTG
GCCTCGGCGCTGCGCACGCGGCAGGTGTTCCCGCCGATCCTCACCCACCTGATCGCCAGCGGCGAGAAGACCGGTGCGCT
GCCGCCGATGCTCGACCGCGCGGCGCAGACCTTGTCGCGCGACATCGAGCGCCGCGCCATGGGCATGACCGCGTTGCTCG
AGCCGCTGATGATCGTGGTCATGGGCGGGGTGGTGCTGACCATCGTGATGGCGGTGCTGATGCCGATCATCGAGATGAAC
CAACTGGTCCAGTAG

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-193)

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Thermus thermophilus HB27

36.139

100

0.361