Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QYN05_RS23180 Genome accession   NZ_CP129406
Coordinates   4345641..4347134 (-) Length   497 a.a.
NCBI ID   WP_023128435.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA272     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4340641..4352134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYN05_RS23145 - 4341901..4342131 (-) 231 WP_012077218.1 hypothetical protein -
  QYN05_RS23150 - 4342226..4342462 (+) 237 WP_023122736.1 DNA-binding transcriptional regulator -
  QYN05_RS23155 - 4342467..4343582 (+) 1116 WP_012077216.1 tyrosine-type recombinase/integrase -
  QYN05_RS23160 - 4343613..4343885 (-) 273 WP_003094362.1 HPr family phosphocarrier protein -
  QYN05_RS23165 rapZ 4343915..4344775 (-) 861 WP_003094361.1 RNase adapter RapZ -
  QYN05_RS23170 ptsN 4344777..4345241 (-) 465 WP_003098853.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QYN05_RS23175 raiA 4345255..4345563 (-) 309 WP_003094359.1 ribosome-associated translation inhibitor RaiA -
  QYN05_RS23180 rpoN/rpoN1 4345641..4347134 (-) 1494 WP_023128435.1 RNA polymerase factor sigma-54 Machinery gene
  QYN05_RS23185 lptB 4347360..4348085 (-) 726 WP_003094355.1 LPS export ABC transporter ATP-binding protein -
  QYN05_RS23190 lptA 4348085..4348612 (-) 528 WP_003120916.1 lipopolysaccharide transport periplasmic protein LptA -
  QYN05_RS23195 lptC 4348599..4349171 (-) 573 WP_003094353.1 LPS export ABC transporter periplasmic protein LptC -
  QYN05_RS23200 - 4349180..4349719 (-) 540 WP_003112742.1 HAD family hydrolase -
  QYN05_RS23205 kdsD 4349719..4350699 (-) 981 WP_003134758.1 arabinose-5-phosphate isomerase KdsD -
  QYN05_RS23210 - 4351113..4351922 (+) 810 WP_003094343.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 56068.24 Da        Isoelectric Point: 4.4327

>NTDB_id=779064 QYN05_RS23180 WP_023128435.1 4345641..4347134(-) (rpoN/rpoN1) [Pseudomonas aeruginosa strain PA272]
MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDNSDPLADGAEQAATAPQESPLQE
SATPSVESLDDDQWSERIPSELPVDTAWEDIYQTSASSLPSNDDDEWDFTARTSSGESLHSHLLWQVNLAPMSDTDRMIA
VTIIDSINNDGYLEESLEEILAAIDPELDVELDEVEVVLRRIQQLEPAGIGARNLRECLLLQLRQLPSTTPWLNEALRLV
SDYLDLLGGRDYSQLMRRMKLKEDELRQVIELIQCLHPRPGSQIESSEAEYIVPDVIVRKDNERWLVELNQEAMPRLRVN
ATYAGMVRRADSSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLDYGEEAMKPLVLHDIAEAVGMHEST
ISRVTTQKYMHTPRGIFELKYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENAKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLV

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=779064 QYN05_RS23180 WP_023128435.1 4345641..4347134(-) (rpoN/rpoN1) [Pseudomonas aeruginosa strain PA272]
ATGAAACCATCGCTAGTCCTCAAGATGGGCCAGCAGCTGACGATGACGCCGCAGCTGCAACAGGCCATACGCCTCCTCCA
GCTATCCACCCTGGACCTCCAGCAGGAAATCCAGGAAGCGCTGGAATCCAATCCCATGCTCGAACGCCAGGAAGACGGCG
ACGATTTCGACAACAGCGACCCTCTCGCCGATGGCGCCGAACAGGCGGCCACCGCGCCCCAGGAGAGCCCCCTCCAGGAA
AGCGCCACGCCCAGCGTCGAAAGCCTCGACGACGACCAGTGGAGCGAACGCATACCCAGCGAGTTGCCGGTGGATACCGC
CTGGGAAGACATCTACCAGACCAGCGCCAGCAGCCTGCCCAGCAACGACGATGACGAGTGGGACTTCACCGCGCGCACCA
GCAGCGGCGAGAGCCTGCACAGCCACCTGCTCTGGCAGGTCAACCTGGCACCGATGTCGGACACCGATCGGATGATCGCG
GTGACCATCATCGATAGCATCAACAACGATGGCTACCTCGAAGAGTCCCTCGAAGAAATCCTCGCCGCCATCGATCCGGA
ACTGGACGTCGAGCTCGACGAAGTGGAAGTCGTGCTGCGCCGCATCCAGCAACTGGAACCCGCCGGCATCGGCGCCCGCA
ACCTGCGCGAGTGCCTGCTGCTGCAACTGCGCCAGTTGCCGTCCACCACGCCCTGGCTGAACGAAGCGCTGCGCCTGGTA
TCCGACTACCTCGACCTGCTCGGCGGCCGCGACTACAGCCAATTGATGCGGCGCATGAAGCTCAAGGAAGACGAACTGCG
CCAGGTCATCGAGCTGATCCAGTGCCTGCATCCCCGGCCCGGTTCGCAGATCGAATCGAGCGAAGCCGAATACATCGTCC
CCGACGTCATCGTGCGCAAGGACAACGAGCGCTGGCTGGTCGAGCTGAACCAGGAGGCGATGCCACGCCTGCGCGTCAAC
GCCACCTACGCCGGCATGGTCCGCCGCGCCGACAGCAGCGCCGACAATACCTTCATGCGCAACCAGTTGCAGGAAGCCCG
CTGGTTCATCAAGAGCCTGCAGAGCCGCAACGAAACGCTGATGAAGGTCGCCACCCAGATCGTCGAGCACCAGCGCGGTT
TCCTCGACTACGGCGAAGAAGCCATGAAGCCGCTGGTCCTGCACGACATCGCCGAAGCGGTGGGCATGCACGAATCGACC
ATTTCGCGGGTCACCACGCAGAAATACATGCATACGCCGCGCGGCATTTTCGAGCTGAAATATTTCTTTTCAAGTCACGT
CAGTACCGCCGAAGGCGGGGAATGCTCGTCCACCGCAATCCGCGCGATCATCAAGAAACTGGTGGCCGCGGAAAATGCGA
AAAAGCCATTGAGCGACAGCAAGATCGCTGGTTTACTGGAGGCACAGGGCATTCAAGTGGCTCGCCGCACCGTCGCCAAA
TACCGCGAATCCCTGGGCATAGCCCCTTCGAGCGAGCGCAAGCGACTGGTGTGA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-495)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.654

100

0.477