Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   POF49_RS17585 Genome accession   NZ_CP116680
Coordinates   3665583..3665897 (-) Length   104 a.a.
NCBI ID   WP_025470199.1    Uniprot ID   -
Organism   Acinetobacter baumannii Canada BC-5     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 3665937..3666869 3665583..3665897 flank 40


Gene organization within MGE regions


Location: 3665583..3666869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF49_RS17585 (POF49_17585) hns 3665583..3665897 (-) 315 WP_025470199.1 H-NS family nucleoid-associated regulatory protein Regulator
  POF49_RS17590 (POF49_17590) - 3665937..3666869 (+) 933 WP_001043692.1 IS5-like element ISAba13 family transposase -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12008.65 Da        Isoelectric Point: 6.4220

>NTDB_id=779062 POF49_RS17585 WP_025470199.1 3665583..3665897(-) (hns) [Acinetobacter baumannii Canada BC-5]
MCNKAVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAEETWT
GRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 315 bp        

>NTDB_id=779062 POF49_RS17585 WP_025470199.1 3665583..3665897(-) (hns) [Acinetobacter baumannii Canada BC-5]
TTGTGCAACAAAGCCGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAAAAAAGATCAAGC
AATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTCTAGAATTTGGCG
CTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAAGAGACTTGGACT
GGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTTAATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(8-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99

96.154

0.952