Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   POF49_RS01555 Genome accession   NZ_CP116680
Coordinates   333244..333885 (+) Length   213 a.a.
NCBI ID   WP_000201229.1    Uniprot ID   A0A0J0ZM99
Organism   Acinetobacter baumannii Canada BC-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 328244..338885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF49_RS01535 (POF49_01535) - 328292..328624 (+) 333 WP_000169598.1 DUF7709 family protein -
  POF49_RS01540 (POF49_01540) - 328627..329451 (+) 825 WP_001990541.1 putative RNA methyltransferase -
  POF49_RS01545 (POF49_01545) ponA 329469..332024 (-) 2556 WP_000736662.1 penicillin-binding protein PBP1a -
  POF49_RS01550 (POF49_01550) pilM 332186..333244 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  POF49_RS01555 (POF49_01555) pilN 333244..333885 (+) 642 WP_000201229.1 PilN domain-containing protein Machinery gene
  POF49_RS01560 (POF49_01560) pilO 333882..334622 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  POF49_RS01565 (POF49_01565) pilP 334633..335160 (+) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  POF49_RS01570 (POF49_01570) pilQ 335223..337388 (+) 2166 WP_001017040.1 type IV pilus secretin PilQ family protein Machinery gene
  POF49_RS01575 (POF49_01575) aroK 337400..337969 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24063.40 Da        Isoelectric Point: 5.3968

>NTDB_id=779025 POF49_RS01555 WP_000201229.1 333244..333885(+) (pilN) [Acinetobacter baumannii Canada BC-5]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKSASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=779025 POF49_RS01555 WP_000201229.1 333244..333885(+) (pilN) [Acinetobacter baumannii Canada BC-5]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGTCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGCGAAAGTGTGGGGGTCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.038

99.061

0.714