Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   POF49_RS01565 Genome accession   NZ_CP116680
Coordinates   334633..335160 (+) Length   175 a.a.
NCBI ID   WP_000695059.1    Uniprot ID   A0A0D5YDP9
Organism   Acinetobacter baumannii Canada BC-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 329633..340160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF49_RS01550 (POF49_01550) pilM 332186..333244 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  POF49_RS01555 (POF49_01555) pilN 333244..333885 (+) 642 WP_000201229.1 PilN domain-containing protein Machinery gene
  POF49_RS01560 (POF49_01560) pilO 333882..334622 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  POF49_RS01565 (POF49_01565) pilP 334633..335160 (+) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  POF49_RS01570 (POF49_01570) pilQ 335223..337388 (+) 2166 WP_001017040.1 type IV pilus secretin PilQ family protein Machinery gene
  POF49_RS01575 (POF49_01575) aroK 337400..337969 (+) 570 WP_000643712.1 shikimate kinase AroK -
  POF49_RS01580 (POF49_01580) aroB 337998..339080 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  POF49_RS01585 (POF49_01585) - 339096..339971 (+) 876 WP_000218810.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19371.59 Da        Isoelectric Point: 9.0270

>NTDB_id=779027 POF49_RS01565 WP_000695059.1 334633..335160(+) (pilP) [Acinetobacter baumannii Canada BC-5]
MKIKQITLCVLASVVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=779027 POF49_RS01565 WP_000695059.1 334633..335160(+) (pilP) [Acinetobacter baumannii Canada BC-5]
ATGAAAATTAAGCAAATTACTCTTTGTGTTTTGGCGAGTGTTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTTGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATCACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCGGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D5YDP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

98.286

100

0.983
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714