Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   QYN05_RS14510 Genome accession   NZ_CP129406
Coordinates   2486308..2486673 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain PA272     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2481308..2491673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYN05_RS14495 pilK 2482652..2483527 (-) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -
  QYN05_RS14500 pilJ 2483588..2485636 (-) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  QYN05_RS14505 - 2485721..2486257 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  QYN05_RS14510 pilH 2486308..2486673 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  QYN05_RS14515 pilG 2486720..2487127 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  QYN05_RS14520 gshB 2487382..2488335 (+) 954 WP_003162014.1 glutathione synthase -
  QYN05_RS14525 - 2488482..2489375 (+) 894 WP_003162015.1 energy transducer TonB -
  QYN05_RS14530 - 2489424..2489993 (+) 570 WP_034020581.1 YqgE/AlgH family protein -
  QYN05_RS14535 ruvX 2489993..2490427 (+) 435 WP_023098361.1 Holliday junction resolvase RuvX -
  QYN05_RS14540 pyrR 2490539..2491051 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=779018 QYN05_RS14510 WP_003084587.1 2486308..2486673(-) (pilH) [Pseudomonas aeruginosa strain PA272]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=779018 QYN05_RS14510 WP_003084587.1 2486308..2486673(-) (pilH) [Pseudomonas aeruginosa strain PA272]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364