Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   QYN05_RS09505 Genome accession   NZ_CP129406
Coordinates   1442462..1443466 (-) Length   334 a.a.
NCBI ID   WP_003113871.1    Uniprot ID   A0A0H2ZEU1
Organism   Pseudomonas aeruginosa strain PA272     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1437462..1448466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYN05_RS09490 - 1437945..1438952 (+) 1008 WP_003092265.1 TolB family protein -
  QYN05_RS09495 mutS 1439078..1441645 (+) 2568 WP_003113873.1 DNA mismatch repair protein MutS -
  QYN05_RS09500 fdxA 1441712..1442035 (+) 324 WP_003092272.1 ferredoxin FdxA -
  QYN05_RS09505 rpoS 1442462..1443466 (-) 1005 WP_003113871.1 RNA polymerase sigma factor RpoS Regulator
  QYN05_RS09510 - 1443571..1444464 (-) 894 WP_003115226.1 peptidoglycan DD-metalloendopeptidase family protein -
  QYN05_RS09515 - 1444510..1445145 (-) 636 WP_003098558.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  QYN05_RS09520 surE 1445178..1445927 (-) 750 WP_003092341.1 5'/3'-nucleotidase SurE -
  QYN05_RS09525 truD 1445915..1446982 (-) 1068 WP_023115122.1 tRNA pseudouridine(13) synthase TruD -
  QYN05_RS09530 ispF 1446979..1447452 (-) 474 WP_003098560.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QYN05_RS09535 fghA 1447523..1448374 (-) 852 WP_003113869.1 S-formylglutathione hydrolase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 38235.38 Da        Isoelectric Point: 5.0478

>NTDB_id=779006 QYN05_RS09505 WP_003113871.1 1442462..1443466(-) (rpoS) [Pseudomonas aeruginosa strain PA272]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=779006 QYN05_RS09505 WP_003113871.1 1442462..1443466(-) (rpoS) [Pseudomonas aeruginosa strain PA272]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-253)

Sigma-70 region 2 (Sigma70_r2)

(99-168)

Sigma-70, region 4 (Sigma70_r4)

(267-320)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(61-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZEU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

66.463

98.204

0.653