Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PMC74_RS22470 Genome accession   NZ_CP116669
Coordinates   5000551..5001921 (-) Length   456 a.a.
NCBI ID   WP_033702939.1    Uniprot ID   A0A6L6TH81
Organism   Pseudomonas capeferrum strain TDA1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4995551..5006921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMC74_RS22450 (PMC74_22450) - 4995628..4997694 (-) 2067 WP_033702935.1 carbon starvation CstA family protein -
  PMC74_RS22455 (PMC74_22455) - 4998055..4998219 (+) 165 WP_156311112.1 lytic polysaccharide monooxygenase -
  PMC74_RS22460 (PMC74_22460) - 4998323..4998688 (+) 366 WP_033702937.1 PilZ domain-containing protein -
  PMC74_RS22465 (PMC74_22465) - 4998954..5000471 (+) 1518 WP_033702938.1 nucleobase:cation symporter-2 family protein -
  PMC74_RS22470 (PMC74_22470) radA 5000551..5001921 (-) 1371 WP_033702939.1 DNA repair protein RadA Machinery gene
  PMC74_RS22475 (PMC74_22475) mscL 5002099..5002518 (+) 420 WP_033702940.1 large-conductance mechanosensitive channel protein MscL -
  PMC74_RS22480 (PMC74_22480) - 5002549..5003325 (-) 777 WP_033703015.1 ferredoxin--NADP reductase -
  PMC74_RS22485 (PMC74_22485) - 5003543..5004250 (+) 708 WP_033702941.1 autoinducer binding domain-containing protein -
  PMC74_RS22490 (PMC74_22490) - 5004347..5005471 (+) 1125 WP_047582611.1 methyltransferase -
  PMC74_RS22495 (PMC74_22495) - 5005504..5005659 (-) 156 WP_033702943.1 DUF2474 domain-containing protein -
  PMC74_RS22500 (PMC74_22500) cydB 5005669..5006676 (-) 1008 WP_033702944.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48862.28 Da        Isoelectric Point: 6.9556

>NTDB_id=778977 PMC74_RS22470 WP_033702939.1 5000551..5001921(-) (radA) [Pseudomonas capeferrum strain TDA1]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSSE
LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVHMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETII
ATARQEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHL
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLS
GEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=778977 PMC74_RS22470 WP_033702939.1 5000551..5001921(-) (radA) [Pseudomonas capeferrum strain TDA1]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAATGCGGCGCGACCTTCCCCAAATGGGCCGGCCAGTGCGGCGAATG
CGGGGCCTGGAACACCCTGGTCGAAACCATGATCGAGAGCGGCGGGGCGGCGGCACCCAGCAGTGGCCGTGCCGGCTGGA
CCGGGCAACAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTGGAAGAGATCCCGCGCTTCACCACCAGCAGCAGCGAA
CTGGACCGCGTGCTGGGTGGCGGTTTGGTCGATGGCTCGGTGGTGCTGATCGGCGGTGACCCGGGTATCGGCAAGTCGAC
CATTCTGTTGCAGACCCTGTGCAACATTGCCGTGCACATGCCTGCGCTGTATGTCACCGGCGAAGAGTCGCAACAGCAGG
TGGCGATGCGCTCGCGCCGCCTGGGCCTGCCCCAGGACCAGCTCAAGGTGATGACCGAAACCTGTATCGAGACCATCATC
GCCACGGCTCGCCAGGAAAAGCCCCGAGTCATGGTCATCGACTCGATCCAGACCATTTTCACCGAACAGCTGCAATCAGC
GCCCGGTGGCGTGGCCCAGGTGCGCGAGAGCACGGCGTTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCCATCTTCC
TGGTGGGCCACGTCACCAAGGAAGGCTCGCTGGCCGGGCCGCGGGTGCTGGAGCACATGGTCGACACCGTGCTGTATTTC
GAGGGCGAGTCCGATGGCCGCCTGCGCCTGCTGCGGGCGGTGAAAAACCGCTTTGGTGCGGTCAACGAACTGGGCGTGTT
CGGCATGACCGACCGCGGCCTCAAGGAGGTTTCGAACCCTTCGGCGATCTTCCTCAATCGCACCCAGGAAGAGGTGCCGG
GCAGTGTGGTGATGGCCACCTGGGAGGGCACTCGGCCGATGCTGGTCGAGGTGCAGGCGCTGGTCGATGACAGCCACCTG
GCCAACCCGCGCCGGGTGACCCTGGGCCTGGACCAGAACCGCCTGGCCATGTTGCTGGCAGTACTGCACCGCCATGGCGG
CATTCCTACCCACGACCAGGATGTGTTCCTCAACGTGGTGGGCGGTGTGAAAGTGCTGGAGACGGCTTCTGACCTGGCTT
TGTTGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCGTTGGCCCATGGGTTGCTGGTGTTTGGCGAGATTGGCTTGTCG
GGCGAGGTGCGGCCGGTGCCCAGTGGCCAAGAGCGGCTGAAAGAGGCGGCCAAGCATGGCTTCAAGCGGGCCATCGTGCC
CAAGGGCAATGCGCCCAAGGAGCCGCCGGCAGGGTTGCAGGTGATCGCCGTGACCCGGCTGGAACAGGCTTTGGATGCCC
TGTTCGAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(355-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(74-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L6TH81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.087

100

0.465
  radA Streptococcus pneumoniae R6

46.087

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.465
  radA Streptococcus pneumoniae D39

46.087

100

0.465
  radA Streptococcus mitis SK321

46.272

100

0.463
  radA Streptococcus mitis NCTC 12261

46.053

100

0.461