Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QYF46_RS15040 Genome accession   NZ_CP129383
Coordinates   3054930..3055559 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain STEC434     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3049930..3060559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYF46_RS15025 (QYF46_15025) helD 3050172..3052226 (-) 2055 WP_048963534.1 DNA helicase IV -
  QYF46_RS15030 (QYF46_15030) yccF 3052349..3052795 (+) 447 WP_001261231.1 YccF domain-containing protein -
  QYF46_RS15035 (QYF46_15035) yccS 3052805..3054967 (+) 2163 WP_000875044.1 YccS family putative transporter -
  QYF46_RS15040 (QYF46_15040) sxy/tfoX 3054930..3055559 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QYF46_RS15045 (QYF46_15045) sulA 3055778..3056287 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QYF46_RS15050 (QYF46_15050) ompA 3056644..3057684 (+) 1041 WP_000750416.1 porin OmpA -
  QYF46_RS15055 (QYF46_15055) matP 3057760..3058212 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QYF46_RS15060 (QYF46_15060) ycbZ 3058398..3060158 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=778947 QYF46_RS15040 WP_000839153.1 3054930..3055559(-) (sxy/tfoX) [Escherichia coli strain STEC434]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=778947 QYF46_RS15040 WP_000839153.1 3054930..3055559(-) (sxy/tfoX) [Escherichia coli strain STEC434]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1