Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PEZ55_RS03365 Genome accession   NZ_CP116616
Coordinates   648015..648620 (-) Length   201 a.a.
NCBI ID   WP_001202377.1    Uniprot ID   B5R6C5
Organism   Salmonella enterica subsp. enterica serovar Gallinarum strain SG1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 643015..653620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PEZ55_RS03350 (PEZ55_03350) helD 643232..645286 (-) 2055 WP_000420504.1 DNA helicase IV -
  PEZ55_RS03355 (PEZ55_03355) - 645410..645856 (+) 447 WP_001261222.1 YccF domain-containing protein -
  PEZ55_RS03360 (PEZ55_03360) yccS 645875..648028 (+) 2154 WP_000950876.1 YccS family putative transporter -
  PEZ55_RS03365 (PEZ55_03365) sxy/tfoX 648015..648620 (-) 606 WP_001202377.1 TfoX/Sxy family DNA transformation protein Regulator
  PEZ55_RS03370 (PEZ55_03370) sulA 648837..649346 (+) 510 WP_000288726.1 SOS-induced cell division inhibitor SulA -
  PEZ55_RS03375 (PEZ55_03375) ompA 649703..650755 (+) 1053 WP_001674965.1 porin OmpA -
  PEZ55_RS03380 (PEZ55_03380) matP 650827..651279 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  PEZ55_RS03385 (PEZ55_03385) - 651465..653225 (+) 1761 WP_000156448.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23151.90 Da        Isoelectric Point: 8.7387

>NTDB_id=778868 PEZ55_RS03365 WP_001202377.1 648015..648620(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Gallinarum strain SG1]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKNSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=778868 PEZ55_RS03365 WP_001202377.1 648015..648620(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Gallinarum strain SG1]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAAAACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5R6C5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751