Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   QYE86_RS06875 Genome accession   NZ_CP129360
Coordinates   1360722..1361873 (+) Length   383 a.a.
NCBI ID   WP_044289313.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CKMM-401M     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1355722..1366873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE86_RS06850 - 1356550..1357836 (+) 1287 WP_000664779.1 pitrilysin family protein -
  QYE86_RS06855 - 1357836..1358540 (+) 705 WP_000646227.1 SDR family NAD(P)-dependent oxidoreductase -
  QYE86_RS06860 - 1358645..1359472 (+) 828 WP_000214890.1 YmfK family protein -
  QYE86_RS06865 - 1359491..1359883 (+) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  QYE86_RS06870 pgsA 1359917..1360495 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QYE86_RS06875 cinA 1360722..1361873 (+) 1152 WP_044289313.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  QYE86_RS06880 recA 1362038..1363081 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  QYE86_RS06885 rny 1363435..1364994 (+) 1560 WP_044289316.1 ribonuclease Y -
  QYE86_RS06890 - 1365291..1365506 (-) 216 WP_000026308.1 hypothetical protein -
  QYE86_RS06895 - 1365680..1366477 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43161.38 Da        Isoelectric Point: 6.0526

>NTDB_id=778848 QYE86_RS06875 WP_044289313.1 1360722..1361873(+) (cinA) [Staphylococcus aureus strain CKMM-401M]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQSNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLNDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=778848 QYE86_RS06875 WP_044289313.1 1360722..1361873(+) (cinA) [Staphylococcus aureus strain CKMM-401M]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTACTAGGTCAAATAGCTAATACCAATGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCGCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACACTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGAGTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCCGTTAAGCAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAACAGCAATTAAATGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTTATAA
GGTTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.146

100

0.431