Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PJX90_RS16080 Genome accession   NZ_CP116609
Coordinates   3322667..3323290 (-) Length   207 a.a.
NCBI ID   WP_026612357.1    Uniprot ID   A0AAW9LN46
Organism   Klebsiella aerogenes strain GY22PK010     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3315972..3324249 3322667..3323290 within 0


Gene organization within MGE regions


Location: 3315972..3324249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJX90_RS16050 (PJX90_16025) - 3316403..3316796 (+) 394 Protein_3150 IS4/IS5 family transposase -
  PJX90_RS16055 (PJX90_16030) - 3316842..3317255 (-) 414 WP_020079236.1 CoA-binding protein -
  PJX90_RS16060 (PJX90_16035) mgsA 3317413..3317871 (+) 459 WP_015367424.1 methylglyoxal synthase -
  PJX90_RS16065 (PJX90_16040) helD 3317902..3319956 (-) 2055 WP_213759807.1 DNA helicase IV -
  PJX90_RS16070 (PJX90_16045) - 3320080..3320526 (+) 447 WP_020079238.1 YccF domain-containing protein -
  PJX90_RS16075 (PJX90_16050) yccS 3320544..3322679 (+) 2136 WP_020079239.1 YccS family putative transporter -
  PJX90_RS16080 (PJX90_16055) sxy/tfoX 3322667..3323290 (-) 624 WP_026612357.1 TfoX/Sxy family DNA transformation protein Regulator
  PJX90_RS16085 (PJX90_16060) sulA 3323740..3324249 (+) 510 WP_020079240.1 SOS-induced cell division inhibitor SulA -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23612.33 Da        Isoelectric Point: 10.0181

>NTDB_id=778827 PJX90_RS16080 WP_026612357.1 3322667..3323290(-) (sxy/tfoX) [Klebsiella aerogenes strain GY22PK010]
MKKISKLRFLQFQECLSPLGKISSRPLFGGYSLAIENTVFAMVAEGEIYLRVCEQSASYRVEHHSPMLMMRKNGRPVALK
YYRIDEALWQDSKMLFHLSQLSLHSARSEKQHQRDSGRLKNLPNISFHMELMLIHAGITDVKMLRTLGAEKSWLKLREHN
KGISINVLESLAGAIAGIHSAALPAQRRQELREWANTQGYSVEDYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=778827 PJX90_RS16080 WP_026612357.1 3322667..3323290(-) (sxy/tfoX) [Klebsiella aerogenes strain GY22PK010]
ATGAAGAAAATTTCAAAATTACGGTTCCTCCAGTTTCAGGAGTGCCTTTCCCCCTTAGGTAAAATCAGTAGCCGGCCTTT
ATTCGGCGGGTATAGTCTGGCGATTGAAAATACCGTATTCGCCATGGTGGCTGAGGGCGAAATCTATCTTAGGGTTTGCG
AACAAAGCGCCTCTTATCGGGTTGAACATCACAGCCCGATGCTGATGATGCGCAAGAATGGCCGGCCAGTGGCCTTAAAG
TATTACCGGATAGATGAAGCACTATGGCAGGACAGTAAAATGCTGTTTCACCTATCGCAGCTGTCATTGCATTCGGCGCG
AAGCGAAAAGCAGCATCAGCGTGATTCCGGCAGACTAAAGAATTTGCCTAATATCAGCTTCCATATGGAGTTGATGTTGA
TCCATGCCGGAATAACCGATGTGAAAATGCTGCGTACACTCGGGGCGGAAAAGAGCTGGTTAAAATTGAGAGAGCATAAT
AAAGGAATATCAATCAATGTCCTTGAGTCCCTGGCGGGCGCGATTGCCGGCATTCATTCCGCCGCGCTCCCGGCGCAGCG
GCGCCAGGAGCTACGGGAGTGGGCTAATACACAAGGATACAGCGTGGAGGATTATTCCGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.777

95.169

0.493