Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   PHA78_RS10210 Genome accession   NZ_CP116604
Coordinates   2099346..2101136 (-) Length   596 a.a.
NCBI ID   WP_029177413.1    Uniprot ID   -
Organism   Streptococcus sp. HN38     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2094346..2106136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHA78_RS10185 - 2094667..2095032 (-) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -
  PHA78_RS10190 - 2095154..2096056 (-) 903 WP_002942329.1 ABC transporter permease -
  PHA78_RS10195 opp4B 2096070..2097026 (-) 957 WP_002942327.1 oligopeptide ABC transporter permease -
  PHA78_RS10200 - 2097028..2097969 (-) 942 WP_012027759.1 ATP-binding cassette domain-containing protein -
  PHA78_RS10205 - 2097972..2098970 (-) 999 WP_002942324.1 ABC transporter ATP-binding protein -
  PHA78_RS10210 oppA 2099346..2101136 (-) 1791 WP_029177413.1 oligopeptide ABC transporter substrate-binding protein Regulator
  PHA78_RS10215 pbp3 2101351..2102592 (+) 1242 WP_024397659.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  PHA78_RS10220 sufB 2102777..2104192 (-) 1416 WP_272158118.1 Fe-S cluster assembly protein SufB -
  PHA78_RS10225 - 2104542..2104982 (-) 441 WP_099806687.1 SUF system NifU family Fe-S cluster assembly protein -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65588.39 Da        Isoelectric Point: 4.4965

>NTDB_id=778785 PHA78_RS10210 WP_029177413.1 2099346..2101136(-) (oppA) [Streptococcus sp. HN38]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPSEVKQDGTAVADAQLKYAFVSATTSSGLLIDELTENTTDST
FGGMVDISMFGYDGDRKLDDSGLAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGVRFDDKFLN
IVGMDEFVAGTASDISGLKKIDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEYI
SFNFGKYDESAKKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPANSLIISFFGDIHDSELEGYSYDPEKAKK
LLEEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDAAID
MYAGGWSTGYDPNPTGLWGPIAAFNMSRFVSDENTKLLNAISSTESFDEKKNVENYKAWQKYAHEQAFAIPTFESESITA
LNKRVKNYDSNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=778785 PHA78_RS10210 WP_029177413.1 2099346..2101136(-) (oppA) [Streptococcus sp. HN38]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCATCTGAAGTAAAACAAGATGGAACAGCAGTCGCAGATGCTCAAT
TGAAATATGCATTTGTTTCAGCTACAACTTCATCAGGTCTCTTGATTGACGAGTTGACTGAAAACACAACTGACTCAACA
TTTGGTGGAATGGTTGATATTTCAATGTTTGGTTACGATGGAGATCGTAAGTTAGATGATTCTGGTCTTGCTAAAGCTGA
ATTTGATGTAAAAGGTAAGAAAATCACTGTTAGTTTGACAGGTAAAGATTACAAGTGGTCAGATGGTGAGCCATTTACAA
TCAATGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGACTATACAGGTGTTCGTTTTGATGATAAATTCTTGAAC
ATTGTGGGTATGGATGAATTTGTTGCTGGAACTGCTTCAGATATCTCAGGTCTTAAGAAAATTGATGACTACACAGTAGA
ATTGACTGTAAAAGAAATGTCACCTTCTATGATGTATGCCGGTGGTGATGTACCTGCCTATATCCAACCAGAACATATCT
ATAAAGACATCCCTGTTGCAGATTGGGAAAAGAGCGAGTACTCACGTACAGCTAAACTTGTTGGTATGGGACCTTGGAAA
ATCAAGGAAATCGTAAACGGTGAGTCTATCACTTATGTACCAAACGAATACTTCTTCAAAGGTACAACGCCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCAGATACTATTGTTTCTGAAATGAAAGCTGGTAACTATGACATCGCAGATATGC
CTGTTGACCAGTTGGATTCATACAAGGATGCTTCTAACTTGAATATCGTTGGTTCTTTGGACTCAGCTTATGAATACATT
TCATTTAATTTTGGTAAATATGACGAGTCTGCTAAGAAAAACGTCATGGATGAAAATGCTAAGATGAATGATGTGAAACT
TCGTCAAGCAATTGCCTATGCGATTGATACTAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAAACT
CATTGATTATCTCATTCTTCGGCGACATTCATGATTCAGAGTTGGAAGGCTATTCATACGATCCTGAAAAAGCGAAAAAA
CTCTTGGAAGAAGCTGGCTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGTAAAGATGGTAAAGAGTTCAAGATTAC
CTTTGCAGCTCGTAAACGTACGGAAGCAAACGAAGCACTTGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ACGTTGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTATAACTCAGTTCAGGCTAATGATGCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAACCCAACAGGACTTTGGGGTCCAATCGCAGCCTTCAACATGTC
ACGTTTCGTGTCTGATGAAAATACTAAGTTGTTGAATGCAATCAGCTCAACAGAATCATTTGACGAGAAGAAAAATGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCAACATTTGAATCTGAGTCAATCACAGCC
CTTAACAAACGTGTGAAAAACTATGATTCTAACTATGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAAAATATCGAACT
TACAGCTGATAAAGGTGTAGTAGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

93.792

100

0.938