Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   PHA78_RS09345 Genome accession   NZ_CP116604
Coordinates   1920744..1922519 (-) Length   591 a.a.
NCBI ID   WP_272158076.1    Uniprot ID   -
Organism   Streptococcus sp. HN38     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1915744..1927519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHA78_RS09325 - 1915958..1917757 (+) 1800 WP_272158074.1 acyltransferase family protein -
  PHA78_RS09330 - 1918143..1918796 (-) 654 WP_029177621.1 phosphatase PAP2 family protein -
  PHA78_RS09335 - 1918821..1919378 (-) 558 WP_024375839.1 ECF transporter S component -
  PHA78_RS09340 - 1919824..1920369 (-) 546 WP_024378130.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  PHA78_RS09345 oppA 1920744..1922519 (-) 1776 WP_272158076.1 oligopeptide ABC transporter substrate-binding protein Regulator
  PHA78_RS09350 yidD 1923118..1923357 (-) 240 WP_024375837.1 membrane protein insertion efficiency factor YidD -
  PHA78_RS09355 - 1923357..1924088 (-) 732 WP_029185420.1 pseudouridine synthase -
  PHA78_RS09360 scpB 1924078..1924647 (-) 570 WP_024380308.1 SMC-Scp complex subunit ScpB -
  PHA78_RS09365 - 1924631..1925350 (-) 720 WP_029173900.1 segregation/condensation protein A -
  PHA78_RS09370 xerD 1925350..1926081 (-) 732 WP_024375834.1 site-specific tyrosine recombinase XerD -
  PHA78_RS09375 cbpB 1926078..1926536 (-) 459 WP_024378617.1 cyclic-di-AMP-binding protein CbpB -
  PHA78_RS09380 - 1926533..1927060 (-) 528 WP_024378616.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65394.03 Da        Isoelectric Point: 4.2580

>NTDB_id=778781 PHA78_RS09345 WP_272158076.1 1920744..1922519(-) (oppA) [Streptococcus sp. HN38]
MKRMKNIALTGIGLLSIATLTACQTKEKTSDVALTFNSEVTHEGQTIEGGSLKYALVASAPSTGILIDELSQTAVDSTFA
GMVDISMFGYDSARTLDDSGLAKAEFDVDAKTVTVSLTGKDYKWSDGQAFTIDDYIFTIEQLASPDYTGVRADTTYTNII
GFEEFQAGTASEISGVRKVDDYTVVLSVKDMSPSMMYAGGGVPYLVMPKHIFKDIAVKDWESSEYSRTAKVVGMGPYKVK
EIVNGESVTYVPNEYYFKGKVKLDSYRIDIVSPDTIVAEMRAGNYDIADMPTDQYESYKDLSNITLLGSLDGIYNYIGFN
LGKYDDASGKNVTDPNAKMNNVKLRQAMGYALDNAVIGEKLYNGLYHPTNSLIISFFGDVHDSELAGYSYNPEKAKKLLD
EAGYKDVDGDGMREDADGKPLTISVAAQKSTETQETMVQQYLTWWKEIGLNVELYTGRTIEYNTFYESIAANDEGIDVYL
AAWIAGLDPDPTSLWGPEAMYNYTRFVSDENTALLNKITSAESFDEQKNIENYKAWQEYAFEQAFAIPTFERESITAVNK
RVKYYDVYIGSDSKSGHENLELTAEKGIAAE

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=778781 PHA78_RS09345 WP_272158076.1 1920744..1922519(-) (oppA) [Streptococcus sp. HN38]
ATGAAAAGAATGAAAAACATCGCTTTAACTGGTATCGGTCTGCTTTCTATTGCAACGTTAACAGCTTGCCAAACTAAAGA
AAAGACGAGCGATGTTGCTCTGACATTTAACTCAGAAGTGACACACGAAGGACAAACTATTGAAGGCGGAAGTCTCAAAT
ATGCCTTGGTAGCTTCGGCGCCTTCGACCGGTATCTTAATTGATGAATTATCGCAGACGGCGGTAGACTCAACCTTTGCA
GGCATGGTTGATATTTCTATGTTTGGATATGATTCAGCTCGTACGTTAGACGATTCAGGCCTTGCTAAGGCAGAGTTTGA
TGTAGATGCAAAGACAGTTACCGTTAGTTTGACAGGCAAGGACTATAAGTGGTCCGATGGGCAAGCCTTCACCATCGATG
ATTATATTTTCACAATCGAACAACTAGCTAGTCCAGACTATACAGGGGTTCGTGCAGATACTACCTATACAAATATCATT
GGCTTTGAAGAATTTCAGGCTGGAACAGCAAGTGAAATTTCAGGTGTTAGGAAGGTTGATGATTATACGGTAGTCCTCTC
AGTGAAAGACATGTCTCCATCCATGATGTATGCTGGTGGTGGAGTACCTTATTTAGTCATGCCGAAACACATTTTTAAAG
ACATTGCAGTCAAAGATTGGGAATCAAGTGAGTATTCTCGTACGGCAAAAGTTGTCGGTATGGGCCCTTATAAGGTCAAG
GAAATTGTCAATGGCGAGTCGGTGACCTATGTACCAAATGAGTACTACTTTAAAGGGAAAGTTAAGCTAGATAGTTACAG
GATTGATATTGTTTCACCAGATACGATTGTTGCAGAAATGAGAGCAGGCAATTATGATATTGCTGATATGCCAACAGACC
AGTACGAATCTTATAAGGACTTATCTAATATTACTTTACTAGGTAGTCTGGATGGTATTTACAATTATATTGGCTTCAAT
CTTGGTAAGTACGATGATGCTAGTGGTAAGAATGTGACCGATCCTAATGCTAAGATGAATAATGTTAAATTGCGTCAAGC
AATGGGATATGCGTTGGACAATGCGGTGATTGGAGAGAAATTATATAACGGCTTGTATCACCCGACAAACTCACTAATTA
TCTCTTTCTTTGGAGATGTTCACGATTCAGAACTAGCTGGCTATAGTTATAACCCTGAAAAGGCTAAAAAACTTCTCGAT
GAGGCAGGATATAAAGACGTAGATGGAGACGGTATGCGTGAAGATGCTGATGGAAAACCGCTTACCATCAGTGTTGCAGC
ACAGAAATCAACCGAAACGCAAGAAACCATGGTACAGCAATACCTTACATGGTGGAAAGAAATTGGTTTGAATGTGGAAC
TCTATACAGGAAGAACTATTGAGTACAATACTTTCTATGAATCAATTGCTGCCAATGATGAGGGGATTGATGTCTATCTT
GCTGCTTGGATTGCCGGCCTAGATCCAGACCCGACATCATTGTGGGGACCTGAAGCGATGTACAACTATACTCGCTTCGT
TTCAGATGAAAACACAGCACTTTTAAATAAAATTACCTCTGCTGAGTCATTTGACGAACAGAAAAATATTGAAAACTACA
AAGCTTGGCAAGAATATGCCTTCGAGCAAGCCTTTGCAATTCCAACCTTTGAACGTGAAAGTATTACTGCCGTTAACAAA
CGCGTTAAATATTACGACGTTTATATCGGTTCGGACAGTAAATCAGGCCATGAAAATCTTGAGTTGACTGCAGAAAAAGG
GATTGCAGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(100-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

65.825

100

0.662