Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   PHA78_RS01205 Genome accession   NZ_CP116604
Coordinates   240039..240752 (+) Length   237 a.a.
NCBI ID   WP_024378075.1    Uniprot ID   A0A0N0DM09
Organism   Streptococcus sp. HN38     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 235039..245752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHA78_RS01190 - 235678..236040 (-) 363 WP_024378078.1 DUF1801 domain-containing protein -
  PHA78_RS01195 treC 236105..237730 (-) 1626 WP_024378077.1 alpha,alpha-phosphotrehalase -
  PHA78_RS01200 treP 237811..239805 (-) 1995 WP_170238118.1 PTS system trehalose-specific EIIBC component -
  PHA78_RS01205 treR 240039..240752 (+) 714 WP_024378075.1 trehalose operon repressor Regulator
  PHA78_RS01210 - 240810..241121 (+) 312 WP_029177093.1 hypothetical protein -
  PHA78_RS01215 - 241118..241666 (+) 549 WP_029177092.1 CvpA family protein -
  PHA78_RS01220 - 242151..244484 (+) 2334 WP_099809128.1 endonuclease MutS2 -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27213.11 Da        Isoelectric Point: 6.7419

>NTDB_id=778751 PHA78_RS01205 WP_024378075.1 240039..240752(+) (treR) [Streptococcus sp. HN38]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTSREERDLMQIQDDYLVLIKSRVYLGDTRQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=778751 PHA78_RS01205 WP_024378075.1 240039..240752(+) (treR) [Streptococcus sp. HN38]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAACAGCTCCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCATTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAGTCGAGAAGA
GCGAGATTTGATGCAGATTCAGGATGATTATCTGGTGTTGATAAAATCCAGGGTCTACTTAGGAGATACGCGACAATTTC
AATACACTGAAAGTAAGCACAAGATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N0DM09

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515