Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   PNR82_RS04495 Genome accession   NZ_CP116597
Coordinates   922884..923600 (-) Length   238 a.a.
NCBI ID   WP_243588935.1    Uniprot ID   -
Organism   Staphylococcus sp. NRL 22/194     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 917884..928600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNR82_RS04475 - 918291..918515 (+) 225 WP_103296997.1 sulfurtransferase TusA family protein -
  PNR82_RS04480 - 918660..919904 (+) 1245 WP_272108686.1 ammonium transporter -
  PNR82_RS04485 - 920376..921864 (+) 1489 Protein_881 sucrose-6-phosphate hydrolase -
  PNR82_RS04490 - 921866..922828 (+) 963 WP_243603605.1 carbohydrate kinase -
  PNR82_RS04495 agrA 922884..923600 (-) 717 WP_243588935.1 LytTR family DNA-binding domain-containing protein Regulator
  PNR82_RS04500 - 923613..924903 (-) 1291 Protein_884 GHKL domain-containing protein -
  PNR82_RS04505 - 924925..925068 (-) 144 WP_243588937.1 cyclic lactone autoinducer peptide -
  PNR82_RS04510 - 925070..925636 (-) 567 WP_243588938.1 accessory gene regulator AgrB -
  PNR82_RS04515 - 926367..927152 (-) 786 Protein_887 carbon-nitrogen family hydrolase -
  PNR82_RS04520 - 927265..927889 (-) 625 Protein_888 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27862.75 Da        Isoelectric Point: 5.0630

>NTDB_id=778702 PNR82_RS04495 WP_243588935.1 922884..923600(-) (agrA) [Staphylococcus sp. NRL 22/194]
MKIFICEDDVKQRENMVSIINNYIMIEEKPMEIALATDDPYEVIEQSKEMNDVGCYFLDIQLEADMNGIKLGSEIRKYDP
IGNIIFVTSHSELTYLTFVYKVSAMDFIFKDDPSQLQTRIIDCIETAHTRLKLLSKESNIETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSFVVNRHNIESIDSKERIVNFKNGEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=778702 PNR82_RS04495 WP_243588935.1 922884..923600(-) (agrA) [Staphylococcus sp. NRL 22/194]
ATGAAAATATTCATTTGTGAAGATGATGTGAAACAGCGTGAAAATATGGTTTCAATTATTAATAATTACATAATGATTGA
GGAAAAACCAATGGAAATTGCGTTAGCTACAGATGATCCTTATGAAGTTATAGAGCAATCTAAAGAAATGAATGATGTAG
GTTGCTATTTCTTAGATATCCAATTAGAAGCGGATATGAATGGCATTAAATTGGGCAGTGAAATTCGTAAGTACGATCCG
ATTGGTAACATCATTTTTGTGACTAGTCATAGTGAATTAACTTATTTAACGTTTGTCTACAAAGTATCTGCAATGGACTT
TATTTTCAAAGATGATCCAAGCCAGTTGCAAACAAGAATTATTGATTGCATAGAAACTGCACATACACGTTTGAAGTTAC
TTTCCAAAGAAAGTAACATTGAAACAATAGAATTAAAACGTGGTAGCAACTCTATTTATGTCCAATATGATGACGTAATG
TTTTTTGAATCATCAACAAAATCTCATCGTTTAATTGCTCATTTAGACAATCGCCAAATTGAATTTTATGGCAATCTTAA
AGAACTCGCCCAATTAGATGACCGCTTCTTTAGATGTCACAACAGTTTTGTTGTTAATCGTCATAATATCGAATCTATTG
ATTCTAAAGAACGTATAGTTAACTTTAAAAACGGCGAACATTGTTACGCTTCCGTTCGAAATGTCAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

88.235

100

0.882