Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   P3U57_RS06430 Genome accession   NZ_CP129352
Coordinates   1294928..1296079 (+) Length   383 a.a.
NCBI ID   WP_320409704.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Dog102     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1289928..1301079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U57_RS06405 (P3U57_06405) yfmH 1290756..1292042 (+) 1287 WP_000664778.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  P3U57_RS06410 (P3U57_06410) ymfI 1292042..1292746 (+) 705 WP_000646227.1 elongation factor P 5-aminopentanone reductase -
  P3U57_RS06415 (P3U57_06415) - 1292851..1293678 (+) 828 WP_000214890.1 YmfK family protein -
  P3U57_RS06420 (P3U57_06420) - 1293697..1294089 (+) 393 WP_072497238.1 helix-turn-helix domain-containing protein -
  P3U57_RS06425 (P3U57_06425) pgsA 1294123..1294701 (+) 579 WP_001025092.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P3U57_RS06430 (P3U57_06430) cinA 1294928..1296079 (+) 1152 WP_320409704.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  P3U57_RS06435 (P3U57_06435) recA 1296244..1297287 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  P3U57_RS06440 (P3U57_06440) rny 1297641..1299200 (+) 1560 WP_001050913.1 ribonuclease Y -
  P3U57_RS06445 (P3U57_06445) - 1299497..1299712 (-) 216 WP_000026308.1 hypothetical protein -
  P3U57_RS06450 (P3U57_06450) - 1299886..1300683 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43253.57 Da        Isoelectric Point: 6.1914

>NTDB_id=778675 P3U57_RS06430 WP_320409704.1 1294928..1296079(+) (cinA) [Staphylococcus aureus strain Dog102]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGLTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=778675 P3U57_RS06430 WP_320409704.1 1294928..1296079(+) (cinA) [Staphylococcus aureus strain Dog102]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGCTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCTTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTGGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.146

100

0.431