Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PML80_RS02550 Genome accession   NZ_CP116590
Coordinates   531165..532961 (+) Length   598 a.a.
NCBI ID   WP_069285627.1    Uniprot ID   A0AAN5YBK0
Organism   Aerococcus urinaeequi strain K79-1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 526165..537961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML80_RS02530 (PML80_02530) - 527214..527915 (-) 702 WP_271736269.1 adaptor protein MecA -
  PML80_RS02535 (PML80_02535) spxA 528045..528461 (-) 417 WP_016897704.1 transcriptional regulator SpxA -
  PML80_RS02540 (PML80_02540) trpS 528676..529671 (+) 996 WP_059134712.1 tryptophan--tRNA ligase -
  PML80_RS02545 (PML80_02545) - 530000..531097 (+) 1098 WP_271736273.1 competence protein CoiA -
  PML80_RS02550 (PML80_02550) pepF 531165..532961 (+) 1797 WP_069285627.1 oligoendopeptidase F Regulator
  PML80_RS02555 (PML80_02555) - 533083..533778 (-) 696 WP_271736275.1 DsbA family protein -
  PML80_RS02560 (PML80_02560) - 533998..534588 (-) 591 WP_271736276.1 CYTH domain-containing protein -
  PML80_RS02565 (PML80_02565) - 534797..535498 (+) 702 WP_271736277.1 GTP pyrophosphokinase -
  PML80_RS02570 (PML80_02570) - 535591..536430 (+) 840 WP_271736278.1 NAD kinase -
  PML80_RS02575 (PML80_02575) - 536514..537395 (+) 882 WP_069285650.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 67822.52 Da        Isoelectric Point: 4.5308

>NTDB_id=778673 PML80_RS02550 WP_069285627.1 531165..532961(+) (pepF) [Aerococcus urinaeequi strain K79-1]
MAKIFEVKPRNEVDSAFQWDLTSIFPDDRAFENALSGFPKKADAFQDYKGTLDQGADQVVTVLEALLAVSRELESLYVYA
HLKHDQDTGDNKYLTYNSQAGALLAQVSEKISWFEPEVLAVSEDVQKTLEDHSEYGHFFRELFAKKAHVLSPNEEALLAG
ASEIFGVSSTTFSLLNNADLKFGKVKDEEGNDVTLSHGSYGVLLESADRSVRENAFKQLYATYEGVKNTNASLMSGNIKG
HNYTAKIRHYDSARQKALDNNNIPESVYDTLVDTVRKNTNLLHEYVALRKDMLGLDDLQMWDMYTPLTGDAPVKFTYEEA
KEITFKALAPLGDQYLKDLAKAFDEKWIDVYENEGKRSGAYSSGAYDTNPYILLNWQDSLNDLYTLVHELGHSMHSYYTR
SNQPYVYGDYSIFVAEIASTTNENLLTSYLLDTIEDKDAQIYILNHYLDGVKGTIFRQTQFAEFEKFMHESDANGQPLTA
DFLSENYFELNKAYYGPSIGEDKTIALEWSRIPHFYMNYYVYQYATGFSAANTLAKRLVEGEEGAVDKYLTYLKSGSSDF
PINVMQKAGIDMTNATYIEETFTQFEQRLAELKGLLNK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=778673 PML80_RS02550 WP_069285627.1 531165..532961(+) (pepF) [Aerococcus urinaeequi strain K79-1]
ATGGCAAAAATTTTTGAAGTAAAACCTAGAAATGAAGTAGACAGTGCGTTTCAATGGGACTTAACTAGTATCTTCCCAGA
TGATCGAGCTTTTGAGAATGCCTTAAGTGGATTCCCAAAAAAAGCGGATGCTTTTCAAGACTATAAAGGCACTCTAGATC
AAGGTGCTGACCAAGTGGTAACCGTATTAGAGGCCTTATTAGCGGTGAGCCGTGAATTGGAATCCCTATACGTTTATGCA
CATTTAAAACATGACCAAGACACAGGAGACAACAAGTACCTAACTTACAACAGTCAAGCGGGTGCCTTACTTGCTCAAGT
TAGTGAAAAGATCTCTTGGTTTGAGCCAGAAGTATTAGCAGTATCTGAAGATGTACAAAAAACTTTGGAAGACCACTCTG
AATATGGTCACTTCTTCCGTGAGTTATTTGCGAAGAAAGCGCATGTCTTATCACCGAATGAAGAGGCTTTACTTGCTGGT
GCTAGCGAAATCTTTGGTGTCTCTTCAACAACTTTCTCACTTTTAAACAATGCTGACTTAAAATTCGGTAAAGTCAAAGA
TGAAGAGGGCAATGATGTTACCCTTTCTCACGGTTCATACGGTGTCCTACTAGAAAGTGCAGACCGTTCTGTTCGAGAAA
ATGCCTTTAAACAACTTTATGCAACTTATGAAGGGGTTAAAAATACCAACGCTTCATTGATGTCAGGTAATATTAAAGGA
CATAATTATACGGCTAAAATTCGTCACTACGATTCAGCACGTCAAAAAGCTTTAGACAACAACAATATTCCAGAAAGTGT
TTATGACACATTAGTCGATACAGTAAGAAAGAATACAAATCTATTACATGAATATGTTGCCTTAAGAAAAGACATGCTAG
GTCTTGATGACTTACAAATGTGGGATATGTATACACCATTAACAGGTGATGCACCGGTGAAATTTACTTACGAAGAAGCT
AAAGAGATTACATTTAAGGCTTTAGCGCCTTTAGGTGACCAATACTTGAAAGACTTGGCCAAAGCCTTTGACGAGAAATG
GATCGATGTTTATGAAAATGAAGGTAAGCGTTCAGGAGCATACTCATCAGGTGCATATGATACCAACCCATATATCTTAC
TAAACTGGCAAGATTCATTGAATGACTTGTATACATTAGTTCATGAGTTAGGTCACTCAATGCACTCTTATTACACTAGA
AGTAACCAACCATACGTATATGGGGACTACTCAATTTTCGTAGCAGAAATTGCCTCTACGACAAACGAAAACTTATTAAC
TTCATATTTACTAGATACAATTGAAGATAAGGATGCACAAATCTATATCTTGAACCACTATCTTGATGGGGTAAAAGGGA
CAATCTTCCGTCAAACACAGTTTGCTGAATTTGAAAAATTCATGCATGAATCGGATGCAAACGGGCAACCTTTAACAGCA
GACTTCCTAAGTGAAAACTACTTTGAATTAAACAAGGCCTACTACGGTCCGTCAATCGGAGAGGATAAAACAATCGCTTT
AGAATGGTCTCGTATCCCTCACTTCTACATGAACTACTATGTTTACCAATATGCAACAGGATTCTCTGCAGCCAACACAT
TGGCTAAACGTTTAGTAGAAGGTGAAGAAGGTGCCGTTGACAAGTACTTAACTTATTTGAAATCAGGTTCATCTGATTTC
CCAATTAATGTTATGCAAAAAGCGGGTATCGATATGACCAATGCCACTTATATCGAAGAAACCTTTACCCAATTCGAGCA
AAGATTAGCTGAATTAAAAGGCTTATTAAACAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(123-182)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.168

99.666

0.5