Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PML84_RS09550 Genome accession   NZ_CP116587
Coordinates   1909776..1911146 (-) Length   456 a.a.
NCBI ID   WP_010018662.1    Uniprot ID   A0A4R5NI95
Organism   Companilactobacillus farciminis strain K68-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1904776..1916146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML84_RS09530 (PML84_09530) - 1905088..1905501 (-) 414 WP_010018666.1 Mini-ribonuclease 3 -
  PML84_RS09535 (PML84_09535) cysS 1905494..1906900 (-) 1407 WP_271793120.1 cysteine--tRNA ligase -
  PML84_RS09540 (PML84_09540) gltX 1906986..1908482 (-) 1497 WP_010018664.1 glutamate--tRNA ligase -
  PML84_RS09545 (PML84_09545) - 1908463..1909758 (-) 1296 WP_201306845.1 PIN/TRAM domain-containing protein -
  PML84_RS09550 (PML84_09550) radA 1909776..1911146 (-) 1371 WP_010018662.1 DNA repair protein RadA Machinery gene
  PML84_RS09555 (PML84_09555) - 1911166..1911708 (-) 543 WP_201306846.1 dUTP diphosphatase -
  PML84_RS09560 (PML84_09560) - 1911840..1912142 (+) 303 WP_010018659.1 GNAT family N-acetyltransferase -
  PML84_RS09565 (PML84_09565) rpiA 1912143..1912832 (+) 690 WP_010018658.1 ribose-5-phosphate isomerase RpiA -
  PML84_RS09570 (PML84_09570) - 1912857..1914200 (+) 1344 WP_271793121.1 aminopeptidase C -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49847.32 Da        Isoelectric Point: 8.0221

>NTDB_id=778662 PML84_RS09550 WP_010018662.1 1909776..1911146(-) (radA) [Companilactobacillus farciminis strain K68-8]
MAKAKTKFVCQNCGYVSPKYLGRCPNCGVWNQMVEEVDQATVKASATPSRRVSDLESKPVKIGDVSFEREPRIKTDMDEL
NRVLGGGIVPGSLILIGGDPGIGKSTLLTQVSGQLQKTGGKVLYVSGEESASQIKMRADRLGIKGDNLYIYPQTDMSYIR
QTIDDMKPDFLIIDSVQTMDEPEISSAVGSISQIREVTAELMNIAKQQNITVFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDTHHSYRILRSVKNRFGSTNEIGIFEMRTKGLVEVANPSEIFLEERLANANGSAVVVSMEGTRPILVEIQSLITPTVF
GNAKRTATGLDHNRVSVIMAVLEKRGNLMLQNQDAYLKSTGGVKLDEPAIDLALAMSIASSYKNMGIPGTDCFVGEVGLT
GEVRRVNRIDQRVNEAEKLGFKRIFIPKNNLGDWSKNNKIQIIGVSTVSDAMNKIF

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=778662 PML84_RS09550 WP_010018662.1 1909776..1911146(-) (radA) [Companilactobacillus farciminis strain K68-8]
TTGGCTAAAGCTAAAACAAAATTCGTATGTCAAAATTGTGGTTACGTCTCACCAAAATATTTAGGGCGCTGTCCTAACTG
TGGCGTTTGGAACCAAATGGTCGAAGAAGTCGATCAAGCAACTGTCAAAGCTAGTGCTACACCTAGTCGTCGCGTGAGTG
ATTTGGAATCTAAACCAGTTAAAATTGGGGATGTCTCATTTGAAAGAGAACCTCGTATCAAGACTGATATGGACGAACTA
AATCGAGTGCTCGGTGGCGGAATCGTGCCAGGGTCATTAATTTTAATTGGTGGAGATCCAGGAATTGGTAAGTCAACGCT
TTTGACCCAAGTTTCGGGACAACTCCAAAAGACCGGTGGCAAAGTTTTGTACGTTTCTGGTGAAGAGAGTGCTTCTCAAA
TTAAGATGCGTGCTGACCGTTTAGGTATCAAAGGCGACAACTTATACATTTATCCACAAACGGATATGAGTTATATTCGT
CAAACAATCGATGATATGAAACCAGACTTTTTGATTATCGATTCTGTGCAGACGATGGATGAGCCAGAGATTTCTTCAGC
AGTCGGTAGTATTTCACAGATTCGTGAAGTAACAGCTGAATTGATGAACATCGCCAAACAGCAAAATATTACTGTCTTTG
TCGTTGGACATGTAACTAAAGGTGGCGCCATCGCGGGACCAAAGATTTTGGAACACATGGTGGATACGGTTTTGTATTTT
GAAGGTGACACTCATCACAGCTATCGAATTTTACGTTCAGTCAAAAACCGTTTTGGTTCGACTAACGAAATCGGTATTTT
TGAGATGCGGACTAAAGGACTAGTTGAAGTGGCTAATCCTTCAGAAATCTTTTTAGAAGAGCGTTTAGCTAATGCCAATG
GTTCTGCAGTGGTAGTTTCAATGGAAGGAACGAGACCAATTTTGGTTGAAATTCAATCCTTGATCACACCAACTGTTTTT
GGGAACGCCAAGAGAACCGCGACTGGATTAGATCATAATCGAGTTTCCGTTATCATGGCGGTACTAGAAAAACGTGGTAA
TTTGATGCTCCAAAATCAGGATGCTTATTTGAAGTCTACTGGTGGCGTAAAATTAGATGAGCCAGCAATCGATTTAGCTT
TGGCGATGTCAATTGCTTCAAGTTATAAGAATATGGGTATCCCTGGAACTGACTGTTTCGTTGGTGAAGTTGGTTTGACT
GGTGAAGTAAGACGAGTCAATCGAATCGATCAACGAGTCAATGAAGCTGAGAAATTAGGTTTCAAGCGAATCTTTATTCC
TAAGAACAATCTTGGCGACTGGTCCAAAAATAATAAGATTCAAATCATCGGTGTCAGTACCGTGTCAGACGCTATGAACA
AAATATTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(58-222)

Subunit ChlI of Mg-chelatase (ChlI)

(366-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R5NI95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

64.912

100

0.649
  radA Streptococcus pneumoniae D39

64.912

100

0.649
  radA Streptococcus pneumoniae R6

64.912

100

0.649
  radA Streptococcus pneumoniae TIGR4

64.912

100

0.649
  radA Streptococcus mitis NCTC 12261

64.912

100

0.649
  radA Streptococcus mitis SK321

64.912

100

0.649
  radA Bacillus subtilis subsp. subtilis str. 168

63.135

99.342

0.627