Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PML84_RS07795 Genome accession   NZ_CP116587
Coordinates   1575918..1576445 (-) Length   175 a.a.
NCBI ID   WP_271792926.1    Uniprot ID   -
Organism   Companilactobacillus farciminis strain K68-8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1570918..1581445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML84_RS07765 (PML84_07765) - 1571694..1572983 (-) 1290 WP_271792921.1 PBSX family phage terminase large subunit -
  PML84_RS07770 (PML84_07770) - 1572931..1573710 (-) 780 WP_271794315.1 terminase small subunit -
  PML84_RS07775 (PML84_07775) - 1573751..1574371 (-) 621 WP_271792922.1 DUF4145 domain-containing protein -
  PML84_RS07780 (PML84_07780) - 1574797..1575294 (-) 498 WP_271792923.1 hypothetical protein -
  PML84_RS07785 (PML84_07785) - 1575327..1575455 (-) 129 WP_271792924.1 hypothetical protein -
  PML84_RS07790 (PML84_07790) - 1575472..1575921 (-) 450 WP_271792925.1 replication terminator protein -
  PML84_RS07795 (PML84_07795) ssbA 1575918..1576445 (-) 528 WP_271792926.1 single-stranded DNA-binding protein Machinery gene
  PML84_RS07800 (PML84_07800) - 1576438..1576641 (-) 204 WP_271792927.1 helix-turn-helix domain-containing protein -
  PML84_RS07805 (PML84_07805) - 1576802..1577008 (+) 207 WP_271792928.1 hypothetical protein -
  PML84_RS07810 (PML84_07810) - 1577013..1577162 (-) 150 WP_271792929.1 hypothetical protein -
  PML84_RS07815 (PML84_07815) - 1577166..1577465 (-) 300 WP_271792930.1 hypothetical protein -
  PML84_RS07820 (PML84_07820) - 1577462..1578220 (-) 759 WP_271792931.1 ATP-binding protein -
  PML84_RS07825 (PML84_07825) - 1578229..1578936 (-) 708 WP_271792932.1 conserved phage C-terminal domain-containing protein -
  PML84_RS07830 (PML84_07830) - 1578939..1579595 (-) 657 WP_271792933.1 putative HNHc nuclease -
  PML84_RS07835 (PML84_07835) - 1579592..1580365 (-) 774 WP_271792934.1 ERF family protein -
  PML84_RS07840 (PML84_07840) - 1580368..1581279 (-) 912 WP_271792935.1 DUF1351 domain-containing protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19572.23 Da        Isoelectric Point: 6.9517

>NTDB_id=778657 PML84_RS07795 WP_271792926.1 1575918..1576445(-) (ssbA) [Companilactobacillus farciminis strain K68-8]
MINRVVLVGRLTKDPELRYTTNGVAVVSFNLAVNRSFTNSQGEREADFISCVIWRKGAENFANFTHKGSLVGVDGRIQTS
SYDNQQGQRIFRTDVILENFSLLEPKNQNGSTSSNNFSNQNSQSNYNQNANNFNNQSNTNNQYRNSNQKSKDPFQNNNGG
IEISDDDLPFCGGTI

Nucleotide


Download         Length: 528 bp        

>NTDB_id=778657 PML84_RS07795 WP_271792926.1 1575918..1576445(-) (ssbA) [Companilactobacillus farciminis strain K68-8]
ATGATTAATCGTGTTGTGCTAGTAGGACGACTGACTAAAGACCCGGAACTACGATATACGACTAATGGTGTAGCAGTTGT
CAGTTTCAATTTGGCTGTTAATAGGTCATTCACTAATTCTCAAGGTGAACGAGAAGCTGATTTTATTAGTTGTGTAATAT
GGCGTAAAGGTGCAGAGAACTTTGCTAATTTTACACATAAAGGTTCGCTAGTGGGTGTAGATGGCCGTATACAAACTAGT
TCGTATGATAACCAACAAGGACAAAGAATCTTTAGAACTGATGTTATTTTGGAGAATTTCTCCTTGTTGGAACCTAAAAA
TCAGAATGGAAGTACTAGTTCAAATAATTTTAGTAATCAGAATTCTCAATCTAACTACAATCAGAACGCTAATAATTTTA
ACAATCAAAGTAATACAAATAATCAATATAGAAATTCAAATCAGAAATCTAAGGATCCATTTCAAAATAATAATGGTGGC
ATCGAGATTAGTGATGATGATTTGCCATTTTGTGGAGGGACGATATGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.884

98.286

0.589
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

99.429

0.583