Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PML78_RS10775 Genome accession   NZ_CP116583
Coordinates   2294109..2295920 (+) Length   603 a.a.
NCBI ID   WP_143139803.1    Uniprot ID   -
Organism   Enterococcus dispar strain K205-4b     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2289109..2300920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML78_RS10755 (PML78_10755) - 2289952..2290665 (-) 714 WP_195516075.1 HAD family hydrolase -
  PML78_RS10760 (PML78_10760) spxA 2291545..2291943 (+) 399 WP_016171276.1 transcriptional regulator SpxA -
  PML78_RS10765 (PML78_10765) - 2292259..2292912 (+) 654 WP_016171277.1 adaptor protein MecA -
  PML78_RS10770 (PML78_10770) - 2293065..2294030 (+) 966 WP_016171278.1 competence protein CoiA -
  PML78_RS10775 (PML78_10775) pepF 2294109..2295920 (+) 1812 WP_143139803.1 oligoendopeptidase F Regulator
  PML78_RS10780 (PML78_10780) - 2296097..2296753 (-) 657 WP_016171280.1 DsbA family protein -
  PML78_RS10785 (PML78_10785) - 2296835..2297416 (-) 582 WP_016171281.1 CYTH domain-containing protein -
  PML78_RS10790 (PML78_10790) - 2297779..2298447 (+) 669 WP_271857321.1 GTP pyrophosphokinase -
  PML78_RS10795 (PML78_10795) - 2298448..2299251 (+) 804 WP_016171283.1 NAD kinase -
  PML78_RS10800 (PML78_10800) - 2299258..2300151 (+) 894 WP_271857323.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68859.38 Da        Isoelectric Point: 4.7389

>NTDB_id=778633 PML78_RS10775 WP_143139803.1 2294109..2295920(+) (pepF) [Enterococcus dispar strain K205-4b]
MMATKQLPTRESLPEKMTWDLTPIFADDQAFDAAFAELKEELNQADQYKGTLHKGPAAFLQALEFCLGIYRKLETLYVYS
HLKNDQDTGNTVYQGLYARASSLFAEASAAVSWFEPEVLTLSDEQIWSYFDQEPKLEIYRHYVTQMVDNRAHVLPADQEE
LLAGSSEIFGAADDIFSVLNNADLVFPTIEDSEGEKIQLSHGVYGQLMESTDPVVREAAFKGLYSVYGQFRNTFAQTLSS
HVKGHNFKAKVRQYASAREASLSNNHIPESVYDTLVDVVNKHLPLLHRYVALRKKLLATDALHMYDMYTPILGEAPIRYS
YEEAVEKAKDALQIMGPEYNEVVTKAFASRWIDVIENKGKRSGAYSSGAYDTAPYILMNWHDTLDQLFTLVHEMGHSVHS
YFTRNNQPFVYGDYSIFLAEIASTTNENILTEYLLETEKDPKVRAYVLNHYLDGFKGTIFRQTQFAEFEHFIHTEDAKGV
PLTSEYLNDYYGDLNAKYYGPDVENDEEIKLEWARIPHFYYNYYVYQYATGFSAASALAKKILAKEDGALDHYLNYLKAG
NSDYPIEVMKKAGVDMTKADYIEDAMKMFEQRLTELEALVAKL

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=778633 PML78_RS10775 WP_143139803.1 2294109..2295920(+) (pepF) [Enterococcus dispar strain K205-4b]
ATGATGGCGACAAAACAATTACCAACTAGAGAAAGCTTACCAGAAAAAATGACGTGGGATTTAACTCCAATTTTTGCCGA
TGACCAAGCTTTTGATGCGGCCTTTGCTGAATTGAAAGAAGAATTAAACCAAGCAGACCAATACAAAGGCACATTGCACA
AAGGTCCGGCCGCCTTTTTACAGGCTTTGGAATTTTGTTTGGGGATTTATCGTAAATTGGAAACGCTCTATGTCTATAGC
CACTTGAAAAATGATCAAGATACCGGAAATACTGTCTATCAGGGTTTATATGCTCGTGCCAGTAGTTTATTTGCAGAAGC
CAGTGCAGCTGTTTCCTGGTTTGAACCTGAAGTTTTAACTTTGTCAGATGAACAAATTTGGTCTTATTTTGACCAAGAGC
CAAAGTTAGAAATTTATCGGCACTATGTAACACAAATGGTAGATAATCGGGCACATGTACTGCCGGCAGATCAAGAAGAA
TTATTAGCGGGTTCAAGTGAAATCTTTGGTGCAGCAGATGATATTTTTTCTGTTTTGAATAATGCAGACTTGGTTTTTCC
TACCATTGAAGATAGCGAAGGTGAAAAAATTCAGTTATCTCATGGTGTGTACGGCCAATTAATGGAATCCACTGACCCTG
TTGTGCGGGAAGCTGCTTTTAAAGGCTTATACAGTGTTTATGGCCAGTTCCGGAATACTTTTGCGCAAACGCTAAGTTCT
CATGTGAAAGGCCACAATTTTAAAGCCAAAGTACGCCAATATGCTTCTGCTAGAGAAGCATCTCTTAGTAATAATCATAT
TCCTGAAAGTGTGTATGACACTTTAGTTGATGTGGTCAATAAGCACTTGCCTTTGTTACATCGCTACGTGGCACTCCGCA
AAAAATTATTAGCAACAGATGCCTTGCATATGTACGATATGTATACGCCAATTTTAGGGGAAGCACCAATCCGTTATTCC
TATGAAGAAGCTGTTGAAAAGGCCAAAGATGCCTTACAAATTATGGGACCAGAGTACAATGAAGTGGTGACCAAAGCTTT
TGCTAGTCGTTGGATTGATGTTATTGAGAATAAAGGAAAACGTAGCGGTGCTTATTCTTCCGGTGCTTACGATACAGCAC
CTTACATTTTAATGAATTGGCATGATACCTTAGATCAATTATTTACTTTAGTCCACGAAATGGGACATAGTGTTCATAGT
TACTTTACGCGTAATAACCAACCATTCGTTTATGGCGATTACTCTATTTTCTTAGCGGAAATTGCTTCCACCACGAATGA
AAATATCTTAACTGAATACTTGTTAGAAACGGAAAAAGATCCGAAGGTACGGGCATATGTCTTGAATCATTATTTAGATG
GCTTCAAAGGAACTATTTTCCGTCAGACTCAATTTGCAGAGTTTGAACATTTCATTCACACGGAAGATGCAAAGGGCGTT
CCGTTAACCAGTGAATATTTAAATGATTACTATGGTGATTTGAATGCGAAATATTACGGTCCCGATGTTGAAAATGATGA
AGAAATTAAATTAGAATGGGCACGAATTCCGCATTTTTACTATAATTATTATGTTTATCAATATGCGACTGGTTTTTCGG
CTGCTTCAGCATTAGCGAAGAAAATATTAGCTAAAGAAGATGGTGCGTTGGACCATTACTTGAATTACTTGAAAGCAGGT
AATAGTGACTATCCAATTGAAGTAATGAAAAAAGCTGGTGTTGATATGACAAAAGCGGATTATATAGAAGATGCGATGAA
GATGTTTGAACAACGATTAACTGAATTAGAAGCATTAGTTGCCAAATTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

55.818

98.342

0.549