Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   MWM17_RS05735 Genome accession   NZ_AP025657
Coordinates   1185963..1186478 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain TUM13867     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1180963..1191478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM17_RS05690 (TUM13867_11020) csrA 1181416..1181601 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  MWM17_RS05720 (TUM13867_11030) yqaB 1183193..1183759 (+) 567 WP_000273303.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  MWM17_RS05725 (TUM13867_11040) yqaA 1183756..1184184 (+) 429 WP_001287454.1 YqaA family protein -
  MWM17_RS05730 (TUM13867_11050) gshA 1184257..1185813 (+) 1557 WP_000611791.1 glutamate--cysteine ligase -
  MWM17_RS05735 (TUM13867_11060) luxS 1185963..1186478 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  MWM17_RS05740 (TUM13867_11070) emrB 1186542..1188080 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  MWM17_RS05745 (TUM13867_11080) emrA 1188097..1189269 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  MWM17_RS05750 (TUM13867_11090) emrR 1189396..1189926 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  MWM17_RS05755 (TUM13867_11100) ygaH 1190017..1190352 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  MWM17_RS05760 (TUM13867_11110) ygaZ 1190342..1191079 (-) 738 WP_000445659.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=77861 MWM17_RS05735 WP_001130211.1 1185963..1186478(+) (luxS) [Escherichia coli strain TUM13867]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=77861 MWM17_RS05735 WP_001130211.1 1185963..1186478(+) (luxS) [Escherichia coli strain TUM13867]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment