Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PML98_RS03765 Genome accession   NZ_CP116581
Coordinates   844788..846470 (+) Length   560 a.a.
NCBI ID   WP_113845377.1    Uniprot ID   -
Organism   Enterococcus durans strain R59-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 839788..851470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML98_RS03735 (PML98_03735) - 840091..840936 (+) 846 WP_081133901.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  PML98_RS03740 (PML98_03740) xseA 840937..842298 (+) 1362 WP_142421941.1 exodeoxyribonuclease VII large subunit -
  PML98_RS03745 (PML98_03745) - 842279..842503 (+) 225 WP_081133899.1 exodeoxyribonuclease VII small subunit -
  PML98_RS03750 (PML98_03750) - 842503..843387 (+) 885 WP_005881067.1 polyprenyl synthetase family protein -
  PML98_RS03755 (PML98_03755) - 843402..844220 (+) 819 WP_005881064.1 TlyA family RNA methyltransferase -
  PML98_RS03760 (PML98_03760) argR 844321..844770 (+) 450 WP_005881063.1 arginine repressor -
  PML98_RS03765 (PML98_03765) recN 844788..846470 (+) 1683 WP_113845377.1 DNA repair protein RecN Machinery gene
  PML98_RS03770 (PML98_03770) - 846653..846769 (-) 117 WP_005881061.1 DUF4044 domain-containing protein -
  PML98_RS03775 (PML98_03775) - 846841..847797 (-) 957 WP_081133895.1 magnesium transporter CorA family protein -
  PML98_RS03780 (PML98_03780) - 848018..848386 (+) 369 WP_005881059.1 DUF3397 domain-containing protein -
  PML98_RS03785 (PML98_03785) mraZ 848559..848990 (+) 432 WP_005881057.1 division/cell wall cluster transcriptional repressor MraZ -
  PML98_RS03790 (PML98_03790) rsmH 849010..849969 (+) 960 WP_081133894.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  PML98_RS03795 (PML98_03795) ftsL 849974..850369 (+) 396 WP_005881053.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63360.75 Da        Isoelectric Point: 4.6662

>NTDB_id=778576 PML98_RS03765 WP_113845377.1 844788..846470(+) (recN) [Enterococcus durans strain R59-1]
MLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRSSSDYIRQGADKCILEGLFEWPKQDGFSALM
NELGIESDGDNLIVRRDMSLTGKNICRVNGHIVTLANLRKIGSYLVDIQGQNEHQELLQPEAHLVLLDRFGDNEFQRKKK
NYQKEFSRYRELERQVRKIQKNEKSFVQRIDMLHFQQEEIAAAQLEVGEEEQLSEEREKLSNYQKIVDSLASGYSALSGE
ERSSVDNVGLAVAELQSIAHLDNEYEAIFENVQSAYYLLQDAIGDMSRQIDLLELDENRLEEVNQRLELIRQLKRKYGES
IEAILNYYDDITQELASSDFSEGQLEKMKSELAEKEEKLQKQAVELHEIRKKIAKGLEQSILKELKSLYMENTEFEVRFS
KSDKAQLDMNGFDQVEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
SQISRYSQVLCITHLPQVAAVADYQYYIKKDVIKGRTQTSVAELAPAQREEEIARMLAGSEITPLTMEHAKELLRLAKQD

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=778576 PML98_RS03765 WP_113845377.1 844788..846470(+) (recN) [Enterococcus durans strain R59-1]
ATGTTACAAGAAATCAGTATTACTAATTTTGCGATTATTCCTGAACTGCGGTTGTCTTTTCATGAGGGAATGACGGCACT
CACAGGTGAAACAGGAGCAGGGAAATCAATTATTATTGATGCTCTTGGGCTGTTGGCAGGAGGAAGAAGCTCAAGTGACT
ATATCCGACAAGGTGCAGATAAGTGTATTCTGGAAGGTTTATTTGAGTGGCCTAAACAAGACGGTTTTTCTGCATTGATG
AATGAGTTAGGAATCGAATCTGATGGAGACAATCTGATTGTTCGAAGAGATATGTCTTTGACAGGAAAAAATATTTGTCG
TGTCAATGGGCACATCGTAACATTAGCTAATCTAAGAAAAATAGGCAGTTATTTGGTAGATATCCAAGGCCAAAATGAAC
ATCAGGAATTGTTACAACCAGAAGCACACTTAGTTTTACTCGATCGTTTTGGCGATAATGAATTTCAGCGTAAGAAGAAA
AATTATCAGAAAGAGTTTTCGCGCTACCGCGAACTTGAACGGCAAGTTCGTAAGATCCAGAAAAATGAAAAATCTTTTGT
CCAACGGATCGACATGCTTCATTTTCAGCAAGAAGAAATCGCTGCGGCACAATTAGAAGTAGGCGAAGAAGAACAGTTAA
GTGAAGAGCGAGAAAAATTAAGTAATTATCAAAAAATAGTGGATAGCTTAGCTAGTGGCTATAGTGCGCTGAGCGGGGAA
GAGCGGAGCAGTGTAGACAATGTAGGATTGGCAGTAGCTGAGCTGCAAAGTATCGCGCACTTGGATAATGAGTACGAGGC
GATTTTTGAAAATGTCCAAAGCGCCTATTATTTATTGCAAGATGCAATCGGCGATATGAGTCGTCAAATCGACTTGCTAG
AGTTAGATGAGAATCGCTTAGAAGAAGTGAATCAACGATTAGAGCTGATCCGTCAATTAAAGCGTAAATATGGGGAATCA
ATCGAAGCCATCTTGAACTATTATGATGATATCACTCAGGAACTAGCCTCTTCCGATTTTTCCGAAGGACAACTTGAAAA
AATGAAAAGTGAACTGGCTGAAAAAGAAGAGAAACTTCAGAAACAGGCAGTAGAATTACATGAGATACGAAAGAAAATCG
CTAAAGGATTAGAGCAATCTATCTTAAAAGAATTAAAAAGTCTTTATATGGAAAATACTGAATTCGAAGTACGCTTTTCA
AAATCTGACAAGGCACAACTAGATATGAATGGATTTGACCAAGTGGAGTTCTACATAACCACGAATCCTGGAGAGCCTTT
GAAACCTTTAGTCAAAGTAGCTTCTGGCGGAGAGCTTTCTCGGATGTTATTAGCATTGAAGACGATCTTTTCTTCTGAAC
AAGGAGTAACTAGTATTATTTTTGATGAAGTAGATACAGGGGTCAGTGGAAGAGTCGCACAAGCAATCGCAGATAAGATC
TCACAAATCTCACGTTATTCACAGGTGTTATGTATTACACATCTTCCTCAAGTAGCAGCCGTGGCTGACTATCAGTATTA
CATTAAAAAAGATGTCATCAAAGGGCGCACTCAAACCTCTGTAGCAGAATTGGCGCCAGCACAGCGTGAAGAAGAAATTG
CACGGATGTTGGCAGGAAGTGAAATCACCCCTTTAACAATGGAACATGCAAAAGAATTACTACGCTTAGCGAAACAAGAC
TAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.301

100

0.504