Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PML98_RS02445 Genome accession   NZ_CP116581
Coordinates   546051..547862 (+) Length   603 a.a.
NCBI ID   WP_115251700.1    Uniprot ID   -
Organism   Enterococcus durans strain R59-1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 541051..552862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML98_RS02425 (PML98_02425) - 542059..542766 (-) 708 WP_005877290.1 HAD family hydrolase -
  PML98_RS02430 (PML98_02430) spxA 543530..543928 (+) 399 WP_005877288.1 transcriptional regulator SpxA -
  PML98_RS02435 (PML98_02435) - 544191..544841 (+) 651 WP_081134910.1 adaptor protein MecA -
  PML98_RS14175 - 544941..545057 (+) 117 WP_334311780.1 competence protein CoiA family protein -
  PML98_RS02440 (PML98_02440) - 545073..545801 (+) 729 Protein_485 competence protein CoiA -
  PML98_RS02445 (PML98_02445) pepF 546051..547862 (+) 1812 WP_115251700.1 oligoendopeptidase F Regulator
  PML98_RS02450 (PML98_02450) - 548639..549106 (+) 468 WP_193808733.1 DUF4809 family protein -
  PML98_RS02455 (PML98_02455) - 549215..550402 (-) 1188 WP_193808734.1 galactokinase -
  PML98_RS02460 (PML98_02460) - 550405..551439 (-) 1035 WP_193808735.1 galactose-1-epimerase -
  PML98_RS02465 (PML98_02465) - 551690..552595 (+) 906 WP_113845262.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69875.40 Da        Isoelectric Point: 4.8243

>NTDB_id=778574 PML98_RS02445 WP_115251700.1 546051..547862(+) (pepF) [Enterococcus durans strain R59-1]
MSETTKLPKREELPEELTWDLTKIFANDQEFDQAYEKLTEELKNSDKYKGTLANSATEFLDALEFVLDVYRKIERIYVYS
SMKNDQDTANTTYQALYARSGSLLAKVSEAISWYEPEVLQLSDDQIWQYFEQEPKLELYRHYIQQMVDNRAHVLSADQES
LLAGAGEIFGSSSDIFAVLNNADLEFPTITDENGKAIQLSHGVYRQLMESTDRNVREAAFKGFFSVYEQFKNTFASTLSA
HIKGHNYKAKIRHYKSAREASLSNNHVPESVYDTLVEVVNKNLPLLHRYMSVRKRLLGVDKLHMYDLYTPVLGEAPIKFT
YEEAKAKALEALKPMGEEYLTVVEKAFSERWIDVIENKGKRSGAYSSGSYDTNPYILLNWHDALDQLFTLVHEMGHSVHS
YFTRSNQPYVYGDYPIFLAEIASTTNENILTEYLLETEEDPRVRAYVLNHYLDGFKGTIFRQTQFAEFEHFMHEEDAKGI
PLTSEYLSENYGKLNTKYYGPAVEEDPEIKYEWSRIPHFYYNYYVYQYSTGFSAASALAKKIWTKEPQALENYLTYLKSG
SSDYPVEVMKKAGVDMTKANYIEDAMVIFEKRLNELEELVEKL

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=778574 PML98_RS02445 WP_115251700.1 546051..547862(+) (pepF) [Enterococcus durans strain R59-1]
ATGAGTGAAACGACCAAATTACCAAAAAGAGAAGAATTACCTGAAGAACTAACATGGGACTTAACGAAAATCTTTGCAAA
CGATCAAGAATTCGATCAGGCTTATGAAAAATTGACTGAAGAATTAAAAAATTCTGATAAATATAAAGGGACTTTGGCAA
ATAGTGCCACAGAATTTTTGGATGCACTTGAATTTGTTTTAGATGTTTATCGAAAAATCGAACGGATCTATGTTTATTCT
AGTATGAAAAATGATCAAGATACTGCAAATACAACCTATCAAGCATTGTATGCCCGATCTGGCAGTTTATTAGCAAAAGT
GAGTGAAGCTATTTCGTGGTACGAACCAGAAGTACTTCAACTTTCAGATGACCAAATCTGGCAGTACTTTGAACAAGAAC
CAAAACTAGAACTTTATCGCCATTATATCCAACAAATGGTAGATAATAGAGCGCATGTCCTGTCTGCTGATCAAGAGTCT
TTACTTGCAGGAGCAGGCGAAATATTTGGTTCCTCTAGTGATATCTTTGCGGTATTGAACAATGCTGATCTAGAGTTTCC
TACGATCACAGATGAAAATGGAAAAGCAATCCAACTTTCTCACGGTGTTTACAGACAGTTAATGGAAAGTACGGATCGCA
ATGTTCGCGAAGCAGCATTCAAAGGTTTTTTCAGTGTATATGAACAATTTAAAAATACATTTGCATCTACGTTGAGTGCG
CATATCAAAGGTCATAATTATAAAGCAAAAATCCGTCATTACAAGTCAGCTCGTGAAGCTTCTTTAAGTAACAACCATGT
TCCAGAAAGCGTGTATGATACATTAGTGGAAGTTGTCAATAAAAACTTGCCATTATTACACCGTTATATGTCTGTTCGTA
AACGTCTTTTAGGGGTAGACAAACTACACATGTACGATCTATATACACCAGTTCTAGGTGAAGCACCAATCAAGTTTACC
TATGAAGAAGCAAAAGCAAAAGCATTGGAAGCCTTAAAACCAATGGGTGAAGAATATCTGACAGTCGTTGAAAAAGCCTT
TTCTGAGCGTTGGATCGATGTAATAGAAAATAAAGGCAAACGTAGTGGCGCGTATTCTTCAGGAAGCTATGATACAAATC
CATACATTCTATTGAATTGGCATGATGCCTTGGATCAACTATTTACATTGGTACATGAAATGGGACATAGTGTCCACAGT
TACTTCACTCGTTCAAACCAACCTTATGTGTATGGGGATTATCCGATTTTCTTAGCTGAAATTGCATCAACAACGAATGA
AAATATTTTAACGGAGTACTTGTTGGAAACAGAAGAAGATCCTCGAGTACGGGCGTATGTTTTGAATCATTACCTTGATG
GATTCAAAGGTACGATATTCCGTCAAACTCAATTTGCAGAATTTGAACATTTTATGCATGAAGAGGATGCAAAAGGTATT
CCGTTGACAAGTGAATACTTGAGTGAAAATTATGGGAAACTGAATACTAAATATTACGGACCAGCTGTAGAAGAAGATCC
AGAAATCAAGTATGAATGGTCACGTATCCCTCATTTCTATTACAATTACTATGTTTATCAATATTCGACTGGATTTTCAG
CTGCCTCTGCTTTAGCGAAGAAAATCTGGACGAAAGAACCACAAGCATTAGAAAACTACCTTACTTATCTGAAGTCTGGA
AGTAGTGATTATCCCGTTGAAGTAATGAAAAAAGCGGGTGTTGATATGACGAAAGCAAATTATATCGAAGATGCAATGGT
CATATTTGAAAAACGCTTGAATGAACTAGAAGAATTAGTAGAAAAATTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

56.661

98.342

0.557