Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QYF45_RS16120 Genome accession   NZ_CP129345
Coordinates   3225794..3226423 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain STEC1590     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3220794..3231423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYF45_RS16105 (QYF45_16105) helD 3221036..3223090 (-) 2055 WP_001377983.1 DNA helicase IV -
  QYF45_RS16110 (QYF45_16110) yccF 3223213..3223659 (+) 447 WP_001261231.1 YccF domain-containing protein -
  QYF45_RS16115 (QYF45_16115) yccS 3223669..3225831 (+) 2163 WP_000875044.1 YccS family putative transporter -
  QYF45_RS16120 (QYF45_16120) sxy/tfoX 3225794..3226423 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QYF45_RS16125 (QYF45_16125) sulA 3226642..3227151 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QYF45_RS16130 (QYF45_16130) ompA 3227508..3228548 (+) 1041 WP_000750416.1 porin OmpA -
  QYF45_RS16135 (QYF45_16135) matP 3228624..3229076 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QYF45_RS16140 (QYF45_16140) ycbZ 3229262..3231022 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=778523 QYF45_RS16120 WP_000839153.1 3225794..3226423(-) (sxy/tfoX) [Escherichia coli strain STEC1590]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=778523 QYF45_RS16120 WP_000839153.1 3225794..3226423(-) (sxy/tfoX) [Escherichia coli strain STEC1590]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1