Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | QYR08_RS11665 | Genome accession | NZ_CP129343 |
| Coordinates | 2463701..2466166 (-) | Length | 821 a.a. |
| NCBI ID | WP_244788308.1 | Uniprot ID | - |
| Organism | Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2458701..2471166
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QYR08_RS11645 (QYR08_11630) | - | 2459506..2460849 (-) | 1344 | WP_010873406.1 | glutathionylspermidine synthase family protein | - |
| QYR08_RS11650 (QYR08_11635) | - | 2460849..2461598 (-) | 750 | WP_010873407.1 | DUF1190 domain-containing protein | - |
| QYR08_RS11655 (QYR08_11640) | - | 2461821..2462303 (+) | 483 | WP_010873408.1 | flavin reductase family protein | - |
| QYR08_RS11660 (QYR08_11645) | - | 2462370..2463620 (-) | 1251 | WP_010873409.1 | exonuclease SbcCD subunit D | - |
| QYR08_RS11665 (QYR08_11650) | clpC | 2463701..2466166 (-) | 2466 | WP_244788308.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| QYR08_RS11670 (QYR08_11655) | dxr | 2466539..2467720 (-) | 1182 | WP_041426024.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| QYR08_RS11675 (QYR08_11660) | fba | 2467885..2468964 (-) | 1080 | WP_010873412.1 | class II fructose-bisphosphate aldolase | - |
| QYR08_RS11680 (QYR08_11665) | hemL | 2469248..2470549 (-) | 1302 | WP_010873413.1 | glutamate-1-semialdehyde 2,1-aminomutase | - |
Sequence
Protein
Download Length: 821 a.a. Molecular weight: 91174.50 Da Isoelectric Point: 5.2218
>NTDB_id=778404 QYR08_RS11665 WP_244788308.1 2463701..2466166(-) (clpC) [Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1]
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARIEVEKIIGRGSGFVAVEIPF
TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLSKVRTQVIRMLGETAEVAAGGGSGGRTKT
PTLDEFGSNLTQMAAEGKLDPVVGRQKEIERVIKILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIANKDIPDILEEKRVV
TLDIGLLVAGTKYRGEFEERLKKIMDEIRQAGNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEY
RKHIERDAALERRFQPVMVGEPSVEETIEILYGLRERYEQHHKLKILDEALEAAAKLSDRYISDRFLPDKAIDLIDEAGS
RVRLINSQLPPAAKELDKELRQILKEKDDAVRNQDFEQAGELKDREDEIKKQIRAIASSKKAEGDNGEPEVTSEEIAHIV
ASWTGVPVNKLTESESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALAA
YFFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVVLFDEIEKAHPDIFNMLLQILEDGRLT
DAKGRTVDFKNTLLIMTSNIGSKVIEKGGGGLGFDFADDQAESQYNRIRSLVNEELKNYFRPEFLNRLDEIIVFRQLNKE
EVKEISEILLRDVFARLVEKEISLQVTDKFKERIVEEGFNPAYGARPLRRAIMRLLEDVLAEEILSGRLKEGSQALVDIG
EDNQVVVIPGETRELIAPGVE
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARIEVEKIIGRGSGFVAVEIPF
TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLSKVRTQVIRMLGETAEVAAGGGSGGRTKT
PTLDEFGSNLTQMAAEGKLDPVVGRQKEIERVIKILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIANKDIPDILEEKRVV
TLDIGLLVAGTKYRGEFEERLKKIMDEIRQAGNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEY
RKHIERDAALERRFQPVMVGEPSVEETIEILYGLRERYEQHHKLKILDEALEAAAKLSDRYISDRFLPDKAIDLIDEAGS
RVRLINSQLPPAAKELDKELRQILKEKDDAVRNQDFEQAGELKDREDEIKKQIRAIASSKKAEGDNGEPEVTSEEIAHIV
ASWTGVPVNKLTESESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALAA
YFFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVVLFDEIEKAHPDIFNMLLQILEDGRLT
DAKGRTVDFKNTLLIMTSNIGSKVIEKGGGGLGFDFADDQAESQYNRIRSLVNEELKNYFRPEFLNRLDEIIVFRQLNKE
EVKEISEILLRDVFARLVEKEISLQVTDKFKERIVEEGFNPAYGARPLRRAIMRLLEDVLAEEILSGRLKEGSQALVDIG
EDNQVVVIPGETRELIAPGVE
Nucleotide
Download Length: 2466 bp
>NTDB_id=778404 QYR08_RS11665 WP_244788308.1 2463701..2466166(-) (clpC) [Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1]
ATGTTTGAACGCTTTACAGAAAAAGCCATTAAAGTAATCATGCTTGCTCAGGAGGAAGCTCGTCGCCTCGGACATAACTT
CGTTGGCACGGAACAAATTCTGCTCGGCTTGATTGGCGAAGGGACTGGCGTCGCCGCCAAGGTTCTCAAATCCATGGGGG
TTAATCTCAAAGATGCCCGCATCGAAGTAGAAAAAATTATCGGGCGGGGATCGGGCTTTGTGGCCGTGGAAATCCCCTTT
ACTCCCCGGGCCAAGCGGGTGCTGGAACTTTCCCTTGAGGAGGCTCGGCAACTGGGTCACAATTACATTGGCACCGAACA
CCTGCTGTTGGGTCTGATTCGAGAAGGGGAAGGGGTAGCTGCTCGGGTCCTAGAAAACCTTGGGGTTGATCTCTCCAAAG
TCCGCACCCAGGTGATCCGCATGTTGGGAGAAACGGCCGAAGTAGCTGCCGGTGGTGGCAGTGGTGGTCGCACCAAAACC
CCTACCTTAGATGAGTTTGGCTCTAACCTCACCCAGATGGCCGCCGAAGGGAAGTTAGACCCGGTGGTAGGTCGCCAAAA
AGAAATTGAGAGGGTGATTAAGATCCTCGGCCGCCGCACCAAGAATAACCCCGTCCTGATTGGGGAGCCGGGGGTTGGTA
AAACGGCAATCGCCGAAGGTTTGGCCCAGCGCATTGCCAACAAAGATATTCCCGACATCCTCGAAGAAAAACGGGTCGTC
ACCCTGGACATCGGTCTATTGGTGGCCGGCACTAAATACCGGGGGGAATTTGAGGAACGGCTGAAAAAAATCATGGATGA
AATCCGCCAAGCCGGTAACATCATCCTGGTGATTGACGAAGTTCATACCCTAATCGGAGCCGGAGCCGCCGAGGGGGCGA
TCGACGCTGCCAATATTCTCAAGCCCGCCCTAGCCCGGGGAGAATTGCAATGTATTGGTGCCACCACCCTGGATGAGTAC
CGCAAACACATTGAACGGGACGCAGCCCTGGAGCGTCGTTTTCAACCGGTGATGGTGGGGGAACCCTCCGTGGAAGAAAC
CATCGAGATTCTTTACGGTCTGCGGGAACGTTACGAACAGCACCACAAACTGAAAATTTTGGACGAAGCCCTGGAAGCCG
CCGCCAAACTTTCCGACCGTTACATCTCCGACCGCTTCCTGCCCGATAAGGCGATCGATCTAATTGACGAAGCTGGTTCC
CGGGTGCGGTTGATTAATTCCCAATTGCCCCCCGCCGCCAAGGAGTTGGACAAGGAATTGCGACAGATTCTTAAAGAAAA
AGATGATGCTGTCCGCAACCAGGACTTCGAGCAAGCCGGGGAACTCAAGGACCGGGAAGACGAAATTAAAAAACAAATCC
GGGCGATCGCCTCTTCCAAAAAAGCGGAAGGGGATAACGGCGAGCCGGAAGTGACCTCCGAAGAAATTGCCCACATCGTC
GCCTCCTGGACAGGGGTGCCGGTGAACAAGCTAACGGAATCCGAGTCAGAAAAACTGTTGCATATGGAAGATACCCTCCA
TCAACGGTTAATTGGCCAGGAAGATGCGGTTAAGGCCGTTTCCCGCGCTATCCGTCGGGCCAGGGTCGGGCTGAAAAATC
CCAACCGTCCCATTGCCAGCTTTATTTTCTCCGGTCCCACTGGGGTAGGTAAAACCGAGTTGACCAAAGCTCTGGCGGCT
TACTTCTTCGGTTCCGAGGAAGCCATGATCCGTCTGGATATGTCGGAATTTATGGAACGACACACCGTTTCCAAATTAAT
TGGTTCCCCTCCGGGTTATGTGGGCTACAACGAAGGCGGTCAGTTGACGGAAGCAGTACGTCGCCGTCCCTACACGGTGG
TGCTGTTCGACGAAATTGAAAAAGCCCACCCCGACATCTTCAATATGCTTCTGCAAATTTTGGAAGATGGTCGCCTCACC
GATGCCAAGGGTCGCACAGTGGATTTCAAAAATACCCTGTTGATCATGACCTCCAACATTGGTTCCAAGGTAATTGAAAA
AGGTGGCGGTGGTTTGGGCTTTGACTTTGCCGATGACCAAGCGGAGTCTCAGTACAATCGCATTCGTTCCTTGGTGAATG
AAGAGTTGAAAAACTACTTCCGCCCTGAGTTCTTGAATCGTTTGGATGAAATTATCGTCTTCCGCCAATTGAACAAGGAG
GAAGTCAAGGAAATTTCGGAAATTCTCCTACGGGATGTGTTTGCCCGGTTGGTGGAAAAAGAAATTTCTCTCCAGGTCAC
CGACAAGTTCAAGGAGCGCATTGTGGAAGAAGGGTTCAACCCAGCCTACGGTGCCCGTCCCCTCCGTCGGGCCATTATGC
GCCTGTTGGAAGACGTGTTAGCCGAAGAAATTCTTTCCGGCCGCCTCAAGGAAGGTAGCCAAGCGCTGGTGGACATTGGT
GAAGACAACCAAGTGGTGGTCATCCCCGGTGAAACGAGGGAACTGATTGCCCCCGGCGTTGAATAA
ATGTTTGAACGCTTTACAGAAAAAGCCATTAAAGTAATCATGCTTGCTCAGGAGGAAGCTCGTCGCCTCGGACATAACTT
CGTTGGCACGGAACAAATTCTGCTCGGCTTGATTGGCGAAGGGACTGGCGTCGCCGCCAAGGTTCTCAAATCCATGGGGG
TTAATCTCAAAGATGCCCGCATCGAAGTAGAAAAAATTATCGGGCGGGGATCGGGCTTTGTGGCCGTGGAAATCCCCTTT
ACTCCCCGGGCCAAGCGGGTGCTGGAACTTTCCCTTGAGGAGGCTCGGCAACTGGGTCACAATTACATTGGCACCGAACA
CCTGCTGTTGGGTCTGATTCGAGAAGGGGAAGGGGTAGCTGCTCGGGTCCTAGAAAACCTTGGGGTTGATCTCTCCAAAG
TCCGCACCCAGGTGATCCGCATGTTGGGAGAAACGGCCGAAGTAGCTGCCGGTGGTGGCAGTGGTGGTCGCACCAAAACC
CCTACCTTAGATGAGTTTGGCTCTAACCTCACCCAGATGGCCGCCGAAGGGAAGTTAGACCCGGTGGTAGGTCGCCAAAA
AGAAATTGAGAGGGTGATTAAGATCCTCGGCCGCCGCACCAAGAATAACCCCGTCCTGATTGGGGAGCCGGGGGTTGGTA
AAACGGCAATCGCCGAAGGTTTGGCCCAGCGCATTGCCAACAAAGATATTCCCGACATCCTCGAAGAAAAACGGGTCGTC
ACCCTGGACATCGGTCTATTGGTGGCCGGCACTAAATACCGGGGGGAATTTGAGGAACGGCTGAAAAAAATCATGGATGA
AATCCGCCAAGCCGGTAACATCATCCTGGTGATTGACGAAGTTCATACCCTAATCGGAGCCGGAGCCGCCGAGGGGGCGA
TCGACGCTGCCAATATTCTCAAGCCCGCCCTAGCCCGGGGAGAATTGCAATGTATTGGTGCCACCACCCTGGATGAGTAC
CGCAAACACATTGAACGGGACGCAGCCCTGGAGCGTCGTTTTCAACCGGTGATGGTGGGGGAACCCTCCGTGGAAGAAAC
CATCGAGATTCTTTACGGTCTGCGGGAACGTTACGAACAGCACCACAAACTGAAAATTTTGGACGAAGCCCTGGAAGCCG
CCGCCAAACTTTCCGACCGTTACATCTCCGACCGCTTCCTGCCCGATAAGGCGATCGATCTAATTGACGAAGCTGGTTCC
CGGGTGCGGTTGATTAATTCCCAATTGCCCCCCGCCGCCAAGGAGTTGGACAAGGAATTGCGACAGATTCTTAAAGAAAA
AGATGATGCTGTCCGCAACCAGGACTTCGAGCAAGCCGGGGAACTCAAGGACCGGGAAGACGAAATTAAAAAACAAATCC
GGGCGATCGCCTCTTCCAAAAAAGCGGAAGGGGATAACGGCGAGCCGGAAGTGACCTCCGAAGAAATTGCCCACATCGTC
GCCTCCTGGACAGGGGTGCCGGTGAACAAGCTAACGGAATCCGAGTCAGAAAAACTGTTGCATATGGAAGATACCCTCCA
TCAACGGTTAATTGGCCAGGAAGATGCGGTTAAGGCCGTTTCCCGCGCTATCCGTCGGGCCAGGGTCGGGCTGAAAAATC
CCAACCGTCCCATTGCCAGCTTTATTTTCTCCGGTCCCACTGGGGTAGGTAAAACCGAGTTGACCAAAGCTCTGGCGGCT
TACTTCTTCGGTTCCGAGGAAGCCATGATCCGTCTGGATATGTCGGAATTTATGGAACGACACACCGTTTCCAAATTAAT
TGGTTCCCCTCCGGGTTATGTGGGCTACAACGAAGGCGGTCAGTTGACGGAAGCAGTACGTCGCCGTCCCTACACGGTGG
TGCTGTTCGACGAAATTGAAAAAGCCCACCCCGACATCTTCAATATGCTTCTGCAAATTTTGGAAGATGGTCGCCTCACC
GATGCCAAGGGTCGCACAGTGGATTTCAAAAATACCCTGTTGATCATGACCTCCAACATTGGTTCCAAGGTAATTGAAAA
AGGTGGCGGTGGTTTGGGCTTTGACTTTGCCGATGACCAAGCGGAGTCTCAGTACAATCGCATTCGTTCCTTGGTGAATG
AAGAGTTGAAAAACTACTTCCGCCCTGAGTTCTTGAATCGTTTGGATGAAATTATCGTCTTCCGCCAATTGAACAAGGAG
GAAGTCAAGGAAATTTCGGAAATTCTCCTACGGGATGTGTTTGCCCGGTTGGTGGAAAAAGAAATTTCTCTCCAGGTCAC
CGACAAGTTCAAGGAGCGCATTGTGGAAGAAGGGTTCAACCCAGCCTACGGTGCCCGTCCCCTCCGTCGGGCCATTATGC
GCCTGTTGGAAGACGTGTTAGCCGAAGAAATTCTTTCCGGCCGCCTCAAGGAAGGTAGCCAAGCGCTGGTGGACATTGGT
GAAGACAACCAAGTGGTGGTCATCCCCGGTGAAACGAGGGAACTGATTGCCCCCGGCGTTGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
61.71 |
98.295 |
0.607 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
44.39 |
99.878 |
0.443 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
52.324 |
81.242 |
0.425 |
| clpC | Streptococcus mutans UA159 |
41.99 |
100 |
0.421 |
| clpE | Streptococcus mutans UA159 |
54.808 |
76.005 |
0.417 |
| clpC | Streptococcus thermophilus LMD-9 |
40.19 |
100 |
0.412 |
| clpC | Streptococcus thermophilus LMG 18311 |
40.071 |
100 |
0.41 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.665 |
77.71 |
0.409 |
| clpE | Streptococcus pneumoniae R6 |
52.665 |
77.71 |
0.409 |
| clpE | Streptococcus pneumoniae D39 |
52.665 |
77.71 |
0.409 |
| clpE | Streptococcus pneumoniae Rx1 |
52.665 |
77.71 |
0.409 |
| clpC | Streptococcus pneumoniae Rx1 |
44.564 |
90.743 |
0.404 |
| clpC | Streptococcus pneumoniae D39 |
44.564 |
90.743 |
0.404 |
| clpC | Streptococcus pneumoniae TIGR4 |
44.43 |
90.743 |
0.403 |