Detailed information NTG0778397

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: QYR08_RS10495
• Genome accession: NZ_CP129343
• Coordinates: 2201451..2202665 (+)
• Length: 404 a.a.
• NCBI ID: WP_014407124.1
• Uniprot ID: -
• Organism: Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2196451..2207665

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYR08_RS10485 (QYR08_10460)	-	2198441..2199844 (-)	1404	WP_010873186.1	efflux RND transporter periplasmic adaptor subunit	-
QYR08_RS10490 (QYR08_10465)	pilT	2200238..2201347 (+)	1110	WP_010873187.1	type IV pilus twitching motility protein PilT	Machinery gene
QYR08_RS10495 (QYR08_10470)	pilC	2201451..2202665 (+)	1215	WP_014407124.1	type II secretion system F family protein	Machinery gene
QYR08_RS10500 (QYR08_10475)	-	2203067..2203744 (+)	678	WP_010873190.1	ATP-dependent Clp protease proteolytic subunit	-
QYR08_RS10505 (QYR08_10480)	-	2203844..2204452 (+)	609	WP_010873191.1	ATP-dependent Clp protease proteolytic subunit	-
QYR08_RS10510 (QYR08_10485)	-	2204663..2205988 (-)	1326	WP_010873192.1	aminopeptidase P N-terminal domain-containing protein	-
QYR08_RS10515 (QYR08_10490)	-	2206071..2207051 (-)	981	WP_010873193.1	S-methyl-5'-thioadenosine phosphorylase	-
QYR08_RS10520 (QYR08_10495)	-	2206996..2207232 (-)	237	WP_010873194.1	DUF3134 domain-containing protein	-
QYR08_RS10525 (QYR08_10500)	-	2207299..2207454 (-)	156	WP_010873195.1	ribbon-helix-helix domain-containing protein	-

Sequence

Protein

• Length: 404 a.a.
• Molecular weight: 43793.74 Da
• Isoelectric Point: 5.2932

>NTDB_id=778397 QYR08_RS10495 WP_014407124.1 2201451..2202665(+) (pilC) [Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1]
MATFVAQVKDRKGKTTKAKVEAMSPEQARTILRQQYAAIGPIKPAGGEINLEFLENLLNNVSVKDKAVFSRQFSVMINAG
VAIVRCLGVLSEQCPNPKLKRALTGISGEVQQGTNLSEAMGKYPECFDDLYVSMVEAGETGGVLDEVLNRLSKLLEDMAR
LQNQIKSAMAYPVAVGFLAVVAFLGMTIFLIPVFAGIFDDLGGELPALTKFMVGLSNFLRSPMAVIPVIVIVVAVFLFKK
YYGTYAGRRQVDAVMLKLPLFGPLNEKTAVARFCRVFGTLTRSGVPIIQSLEIVCNTVPNKVISDAIAGAISEIQQGGMM
SLALQQSKVFPSLAIQMISIGEETGELDAMMMKVADFYEDEVEQTVKALTSIIEPAMMVLIAGMVGTILLSMYLPMFAIF
DQLG

Nucleotide

• Length: 1215 bp

>NTDB_id=778397 QYR08_RS10495 WP_014407124.1 2201451..2202665(+) (pilC) [Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1]
ATGGCTACGTTTGTCGCTCAAGTTAAAGATCGTAAAGGTAAAACCACCAAAGCCAAGGTGGAAGCCATGAGTCCAGAACA
GGCTCGTACCATCCTCCGCCAACAATACGCGGCGATCGGCCCCATTAAGCCAGCCGGAGGGGAAATAAACCTCGAATTCC
TGGAAAATTTACTTAACAACGTTAGTGTCAAGGACAAAGCGGTTTTCTCCCGACAGTTTTCCGTCATGATCAACGCTGGC
GTGGCGATCGTTCGTTGTTTGGGGGTGCTGTCGGAACAATGTCCTAATCCCAAACTGAAAAGGGCATTAACGGGTATTAG
TGGGGAAGTTCAACAGGGCACTAACCTTTCTGAAGCCATGGGCAAATATCCCGAATGTTTTGATGACCTCTACGTCAGCA
TGGTGGAAGCAGGGGAAACGGGGGGGGTTTTAGACGAAGTTCTCAACCGACTTTCCAAACTGCTGGAAGACATGGCCCGT
CTGCAAAACCAAATTAAATCCGCCATGGCTTATCCGGTGGCAGTAGGTTTCTTGGCGGTGGTGGCTTTTCTCGGTATGAC
CATCTTCCTCATCCCTGTCTTTGCGGGAATTTTTGATGACCTGGGGGGAGAACTGCCCGCTTTAACCAAATTTATGGTCG
GCCTAAGTAACTTTTTAAGAAGTCCAATGGCCGTCATCCCCGTAATTGTTATTGTGGTTGCCGTTTTTCTATTCAAAAAA
TATTACGGAACCTATGCTGGGCGGCGACAAGTCGATGCGGTGATGTTGAAACTACCTTTGTTTGGTCCCCTGAATGAAAA
AACCGCTGTAGCTAGGTTTTGCCGGGTATTTGGCACCCTTACCCGTTCGGGGGTTCCCATTATTCAGTCTTTGGAAATTG
TTTGTAATACTGTGCCCAATAAAGTGATTTCCGATGCGATCGCCGGGGCTATTAGTGAAATTCAACAGGGGGGCATGATG
AGTTTGGCTCTGCAACAAAGTAAGGTTTTCCCCTCTTTGGCGATTCAAATGATTAGTATTGGGGAAGAAACGGGGGAACT
GGATGCCATGATGATGAAAGTGGCGGACTTCTATGAAGACGAAGTAGAACAAACCGTCAAAGCGTTGACTAGTATTATAG
AACCAGCTATGATGGTGCTGATTGCCGGTATGGTCGGGACAATTTTGCTTTCCATGTATCTACCCATGTTTGCCATCTTT
GATCAGTTAGGTTAA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (69-192)

• Type II secretion system (T2SS), protein F (T2SSF) (273-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	40.64	100	0.408