Detailed information NTG0778392

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: QYR08_RS09870
• Genome accession: NZ_CP129343
• Coordinates: 2060199..2062817 (+)
• Length: 872 a.a.
• NCBI ID: WP_010873076.1
• Uniprot ID: -
• Organism: Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2055199..2067817

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYR08_RS09865 (QYR08_09840)	-	2058395..2059915 (-)	1521	WP_010873075.1	class I SAM-dependent methyltransferase	-
QYR08_RS09870 (QYR08_09845)	clpC	2060199..2062817 (+)	2619	WP_010873076.1	ATP-dependent chaperone ClpB	Regulator
QYR08_RS09875 (QYR08_09850)	-	2062803..2063102 (-)	300	WP_010873077.1	hypothetical protein	-
QYR08_RS09880 (QYR08_09855)	-	2063295..2064293 (-)	999	WP_010873078.1	phosphoribulokinase	-
QYR08_RS09885 (QYR08_09860)	petH	2064816..2066057 (+)	1242	WP_010873079.1	ferredoxin--NADP reductase	-
QYR08_RS09890 (QYR08_09865)	-	2066149..2066988 (-)	840	WP_010873080.1	Cof-type HAD-IIB family hydrolase	-

Sequence

Protein

• Length: 872 a.a.
• Molecular weight: 98122.53 Da
• Isoelectric Point: 4.9061

>NTDB_id=778392 QYR08_RS09870 WP_010873076.1 2060199..2062817(+) (clpC) [Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1]
MQPTDPNKFTEKAWEAIAKTPEIAKQHRQQQIETEHLLSALLEQNGLATSIFNKAGASIPRVNDQVNSFIAQQPKLSNPS
ESIYLGRSLDKLLDNAEIAKSKYGDDYISIEHLMAAYGQDDRLGKNLYREIGLTENKLAEIIKQIRGTQKVTDQNPEGKY
ESLEKYGRDLTELAREGKLDPVIGRDEEVRRTIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRIINHDVPESLRDRKLI
SLDMGALIAGAKYRGEFEERLKAVLKEVTDSQGQIILFIDEIHTVVGAGATQGAMDAGNLLKPMLARGALRCIGATTLDE
YRKYIEKDAALERRFQEVLVDEPNVLDTISILRGLKERYEVHHGVKIADSALVAAAMLSNRYISDRFLPDKAIDLVDEAA
AKLKMEITSKPEELDEVDRKILQLEMERLSLQRENDSASKERLEKLEKELADFKEEQSKLNGQWQSEKTVIDQIRTVKET
IDQVNLEIQQAQRDYDYNKAAELQYGKLTDLQRQVEALETQLAEQQTSGKSLLREEVLESDIAEIISKWTGIPISKLVES
EKEKLLHLEDELHSRVIGQDEAVTAVAEAIQRSRAGLSDPNRPTASFIFLGPTGVGKTELAKALAKNLFDTEEALVRIDM
SEYMEKHAVSRLMGAPPGYVGYEEGGQLTEAIRRRPYSVILFDEIEKAHGDVFNVMLQILDDGRLTDAQGHVVDFKNTII
IMTSNLGSQYILDVAGDDSRYEEMRSRVMDVMRENFRPEFLNRVDETIIFHGLQKSELRSIVQIQIQSLATRLEEQKLTL
KLTDKALDFLAAVGYDPVYGARPLKRAVQKYLETAIAKGILRGDYKPGETIVVDETDERLSFTSLRGDLVIV

Nucleotide

• Length: 2619 bp

>NTDB_id=778392 QYR08_RS09870 WP_010873076.1 2060199..2062817(+) (clpC) [Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1]
ATGCAACCCACAGATCCTAATAAATTTACGGAGAAAGCTTGGGAGGCGATCGCCAAAACACCGGAGATTGCTAAACAGCA
TCGACAACAGCAAATTGAGACGGAACACCTACTCAGTGCCCTACTAGAACAAAATGGTCTGGCCACCAGCATCTTTAATA
AGGCTGGGGCGAGCATTCCCCGAGTTAACGATCAAGTTAATAGCTTTATTGCCCAACAGCCAAAATTAAGTAATCCGAGT
GAATCGATTTATTTAGGCCGCAGTCTCGATAAATTGTTGGACAATGCGGAAATAGCCAAGTCTAAATATGGAGACGACTA
TATTTCCATCGAGCACTTGATGGCGGCTTACGGCCAAGATGACCGCCTGGGCAAAAACTTATATCGAGAAATTGGCCTAA
CAGAAAATAAGTTGGCAGAAATTATCAAGCAAATTAGAGGAACCCAAAAAGTGACCGATCAAAATCCAGAGGGCAAATAC
GAATCCCTTGAAAAATATGGGCGAGATTTAACGGAATTAGCCCGGGAAGGTAAACTAGATCCTGTCATTGGCCGGGATGA
AGAAGTGCGGCGCACCATTCAGATCCTTTCCCGCCGCACAAAAAATAACCCTGTGTTAATTGGGGAACCGGGGGTTGGTA
AAACGGCGATCGCCGAAGGTTTAGCCCAAAGAATTATTAACCATGACGTACCGGAATCATTGCGGGATCGCAAACTAATT
TCCCTCGATATGGGGGCGTTAATTGCCGGGGCAAAATACCGGGGGGAATTTGAAGAAAGACTTAAAGCGGTACTTAAAGA
AGTTACCGACAGCCAGGGGCAAATTATTCTCTTTATTGACGAAATTCATACCGTTGTCGGCGCTGGGGCCACCCAAGGAG
CCATGGATGCGGGCAACTTATTGAAACCCATGTTAGCCCGGGGTGCTTTGCGTTGTATCGGGGCCACCACTTTAGATGAA
TATCGCAAATATATCGAAAAAGATGCGGCTTTGGAACGACGTTTCCAGGAAGTTTTAGTGGATGAACCCAATGTATTAGA
TACCATTTCCATTCTCCGGGGATTAAAAGAACGCTATGAAGTACACCACGGCGTAAAAATTGCCGATAGTGCCCTGGTAG
CGGCGGCCATGTTGTCCAATCGTTACATCAGTGATCGTTTTCTGCCGGATAAAGCTATTGATTTAGTAGACGAAGCAGCG
GCCAAATTAAAAATGGAAATCACCTCCAAACCAGAGGAATTAGATGAAGTTGACCGGAAAATTCTCCAACTAGAAATGGA
GCGTTTATCTTTACAACGGGAAAATGATTCTGCTTCCAAGGAGCGGCTAGAAAAATTGGAGAAAGAGTTGGCTGATTTTA
AAGAAGAACAGTCTAAACTTAATGGCCAATGGCAGTCGGAAAAAACGGTTATTGATCAAATTCGTACTGTTAAGGAAACC
ATCGACCAGGTGAACCTAGAAATTCAACAGGCCCAACGGGATTACGACTACAATAAAGCAGCGGAGTTACAGTATGGCAA
ATTAACTGATTTACAGCGGCAAGTGGAAGCTTTGGAAACCCAATTGGCGGAGCAACAAACCTCTGGCAAATCCCTCTTAC
GGGAAGAAGTTTTAGAGTCTGACATTGCTGAAATTATCTCGAAATGGACCGGCATTCCCATCAGTAAATTGGTGGAATCG
GAAAAAGAAAAACTGCTCCACTTGGAAGATGAACTACACAGCCGAGTGATTGGTCAGGATGAAGCGGTAACCGCCGTAGC
CGAAGCCATTCAACGCTCCCGAGCTGGTCTTTCCGATCCTAATCGTCCCACCGCTAGCTTTATTTTTCTGGGCCCCACAG
GGGTCGGGAAAACTGAGTTAGCGAAGGCTTTGGCGAAAAATTTATTCGACACGGAAGAAGCCCTGGTGCGGATTGATATG
TCTGAATATATGGAAAAACACGCTGTTTCCCGTTTAATGGGGGCCCCTCCGGGCTATGTGGGCTATGAAGAAGGGGGACA
ATTGACGGAAGCAATTCGCCGCCGGCCCTATTCGGTCATTCTTTTTGACGAGATTGAAAAAGCCCATGGGGATGTGTTTA
ACGTCATGCTCCAAATCCTGGATGATGGCCGTTTAACCGATGCCCAAGGCCATGTGGTGGACTTCAAAAATACGATTATC
ATTATGACCAGTAACCTGGGCTCCCAATACATTTTGGATGTGGCGGGGGATGATAGTCGTTATGAAGAAATGCGGAGCCG
AGTTATGGATGTAATGCGGGAAAACTTCCGCCCAGAATTTCTCAATCGGGTGGATGAAACGATTATTTTCCATGGCTTAC
AAAAATCCGAGTTACGATCCATTGTCCAAATTCAAATTCAGTCTTTGGCTACCCGTTTGGAGGAACAAAAATTAACTTTG
AAGTTAACGGATAAAGCCCTAGATTTTCTGGCTGCCGTGGGCTATGACCCCGTTTATGGGGCCCGACCTTTAAAACGAGC
CGTCCAAAAATACCTAGAAACGGCGATCGCCAAGGGAATTTTACGGGGGGATTACAAACCTGGTGAGACCATTGTGGTGG
ATGAAACCGACGAACGCCTCAGTTTTACCAGTTTAAGGGGGGATTTAGTCATCGTTTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (602-766)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (101-147)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (22-70)

• ATPase family associated with various cellular activities (AAA) (AAA) (205-322)

• AAA lid domain (AAA_lid_9) (347-446)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (773-853)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	46.698	98.968	0.462
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.928	100	0.429
clpE	Streptococcus mutans UA159	48.699	79.358	0.386
clpE	Streptococcus pneumoniae TIGR4	48.083	77.752	0.374
clpE	Streptococcus pneumoniae Rx1	47.935	77.752	0.373
clpE	Streptococcus pneumoniae D39	47.935	77.752	0.373
clpE	Streptococcus pneumoniae R6	47.935	77.752	0.373