Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   QYR08_RS03850 Genome accession   NZ_CP129343
Coordinates   817625..819637 (-) Length   670 a.a.
NCBI ID   WP_010871940.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 812625..824637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR08_RS03825 (QYR08_03815) - 812686..813252 (+) 567 WP_010871935.1 DUF4269 domain-containing protein -
  QYR08_RS03830 (QYR08_03820) - 813457..815262 (+) 1806 WP_010871936.1 ABC transporter ATP-binding protein -
  QYR08_RS03835 (QYR08_03825) - 815367..815873 (+) 507 WP_231848050.1 hypothetical protein -
  QYR08_RS03840 (QYR08_03830) - 815956..816600 (-) 645 WP_228670068.1 Uma2 family endonuclease -
  QYR08_RS03845 (QYR08_03835) - 816641..817468 (-) 828 WP_010871939.1 TPM domain-containing protein -
  QYR08_RS03850 (QYR08_03840) recP/tkt 817625..819637 (-) 2013 WP_010871940.1 transketolase Machinery gene
  QYR08_RS03855 (QYR08_03845) fabF 819760..821010 (-) 1251 WP_010871941.1 beta-ketoacyl-ACP synthase II -
  QYR08_RS03860 (QYR08_03850) acpP 821208..821441 (-) 234 WP_010871942.1 acyl carrier protein -
  QYR08_RS03865 (QYR08_03855) - 821651..822082 (-) 432 WP_010871943.1 hypothetical protein -
  QYR08_RS03870 (QYR08_03860) sipA 822119..822364 (-) 246 WP_010871944.1 regulatory protein SipA -
  QYR08_RS03875 (QYR08_03865) bfr 822552..823025 (+) 474 WP_014407079.1 bacterioferritin -
  QYR08_RS03880 (QYR08_03870) - 823041..823631 (-) 591 WP_041425929.1 short chain dehydrogenase -
  QYR08_RS03885 (QYR08_03875) rplY 823886..824182 (-) 297 WP_041425930.1 50S ribosomal protein L25 -

Sequence

Protein


Download         Length: 670 a.a.        Molecular weight: 71725.23 Da        Isoelectric Point: 5.2831

>NTDB_id=778376 QYR08_RS03850 WP_010871940.1 817625..819637(-) (recP/tkt) [Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1]
MVVATQSLDELSINAIRFLAVDAIEKAKSGHPGLPMGAAPMAFTLWNKFMKFNPKNPKWFNRDRFVLSAGHGSMLQYALL
YLLGYDSVTIEDIKQFRQWESSTPGHPENFLTAGVEVTTGPLGQGIANGVGLALAEAHLAATYNKPDATIVDHYTYVILG
DGCNMEGISGEAASIAGHWGLGKLIALYDDNHISIDGSTDVAFTEDVSKRFEAYGWHVLHVEDGNTDLAAIAKAIEEAKA
VTDKPSMIKVTTIIGYGAPNKSDTAGIHGAALGTDEVAATRKNLGWDYAPFEVPQEVLDYTRKAIERGASYEAEWNQAFA
QYKTKYPTEAAAFERQLSGALPEGWDKTLASFTPDQKGLATRKYSEECLNALAPVLPELIGGSADLTHSNLTELHCSGDF
QKGAYQNRNVHFGVREHAMGAICNGIALHGSGLLPFGATFLIFTDYMRAAIRLSALSEAGVIWVMTHDSIGQGEDGPTHQ
PIEVLASLRAIPNLTVIRPADGNETSGAYKVAIAKAKENAPTLLSLTRQAVPNLPGTSIDAVAKGAYTIVDSEGVPELIL
IGTGSEVQLCVAAAEKLAAQGKKVRVVSMPSWELFETQDAAYKESVLPKAVTKRLSVEAATNFGWHKYVGTEGDTVSIET
FGASAPGGVCLEKFGFSVDNVLAKAKTLLS

Nucleotide


Download         Length: 2013 bp        

>NTDB_id=778376 QYR08_RS03850 WP_010871940.1 817625..819637(-) (recP/tkt) [Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1]
ATGGTCGTTGCTACCCAGTCCTTAGACGAACTTTCTATTAATGCCATTCGCTTTTTAGCCGTTGACGCCATTGAAAAGGC
CAAATCTGGCCACCCTGGTTTGCCCATGGGAGCCGCTCCTATGGCCTTTACCCTGTGGAACAAGTTCATGAAGTTCAATC
CCAAGAACCCCAAGTGGTTCAATCGGGACCGCTTTGTGTTGTCCGCCGGCCATGGCTCCATGTTGCAGTATGCCCTGCTC
TATCTGCTGGGTTATGACAGTGTGACCATCGAAGACATTAAACAGTTCCGTCAATGGGAATCTTCTACCCCCGGTCACCC
GGAGAATTTTCTCACTGCTGGAGTAGAAGTCACCACCGGCCCCTTGGGTCAAGGCATTGCCAATGGTGTGGGTTTAGCCC
TGGCGGAAGCCCATTTGGCTGCCACCTACAACAAGCCTGATGCCACCATTGTGGACCATTACACCTATGTGATTCTGGGG
GATGGTTGCAATATGGAAGGTATTTCCGGGGAAGCCGCTTCCATTGCAGGGCATTGGGGTTTGGGTAAATTAATCGCCCT
CTATGATGACAATCATATTTCCATTGATGGTTCCACCGATGTGGCCTTCACCGAAGATGTGAGCAAGCGTTTTGAAGCCT
ACGGTTGGCACGTGCTCCATGTCGAAGATGGCAATACCGATTTGGCGGCGATCGCCAAGGCTATTGAGGAAGCCAAGGCC
GTAACCGATAAACCTTCTATGATCAAAGTCACCACCATCATTGGTTACGGTGCGCCCAATAAATCCGATACCGCGGGCAT
CCATGGGGCTGCTTTGGGCACTGATGAAGTGGCCGCCACCCGCAAAAACTTGGGTTGGGATTATGCTCCCTTTGAAGTGC
CCCAGGAGGTGTTGGACTACACTCGCAAAGCCATTGAACGGGGAGCCAGCTACGAAGCGGAATGGAACCAAGCCTTTGCC
CAATACAAAACCAAATATCCCACTGAAGCGGCCGCCTTTGAACGGCAACTGAGCGGTGCTTTACCGGAAGGTTGGGACAA
AACCCTAGCTAGCTTTACCCCCGATCAAAAGGGTTTGGCCACCCGGAAATATTCCGAGGAATGTCTCAATGCGTTGGCCC
CCGTATTACCAGAGTTAATTGGTGGTTCGGCGGATTTAACCCACTCCAACCTAACGGAACTTCACTGCTCTGGGGATTTC
CAAAAAGGAGCTTATCAAAACCGTAACGTCCACTTTGGGGTACGGGAACATGCCATGGGGGCTATCTGTAACGGTATTGC
TCTCCACGGTTCTGGGTTACTACCCTTCGGTGCTACCTTCCTAATTTTCACCGATTACATGCGGGCCGCCATTCGCCTTT
CGGCCCTTTCCGAGGCAGGGGTAATTTGGGTCATGACCCACGACTCCATTGGTCAAGGGGAAGATGGTCCCACCCACCAA
CCCATTGAAGTGCTGGCTTCCCTCCGGGCTATTCCCAACTTGACTGTGATTCGTCCCGCCGATGGCAATGAAACCTCCGG
TGCCTACAAAGTGGCGATCGCCAAAGCGAAGGAAAATGCCCCCACCCTGTTATCCTTGACCCGGCAGGCGGTACCCAATT
TGCCTGGAACTTCCATTGATGCCGTGGCCAAAGGTGCCTATACCATTGTTGATTCTGAAGGTGTTCCTGAGTTAATCTTG
ATAGGTACGGGTTCCGAAGTACAACTTTGTGTGGCTGCTGCTGAAAAGTTAGCCGCTCAAGGCAAGAAAGTCCGGGTAGT
TTCCATGCCTTCCTGGGAACTGTTTGAAACCCAGGATGCCGCCTACAAAGAGTCAGTGTTGCCAAAGGCTGTCACCAAAC
GCCTTTCCGTAGAAGCCGCCACCAACTTTGGTTGGCACAAATATGTGGGCACGGAAGGAGATACAGTTAGTATTGAAACA
TTTGGTGCCTCGGCGCCCGGCGGGGTTTGCCTCGAGAAATTTGGTTTCAGCGTTGATAATGTGCTGGCCAAAGCTAAAAC
TCTCCTGAGCTAG

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(10-342)

Transketolase, C-terminal domain (Transketolase_C)

(551-661)

Transketolase, pyrimidine binding domain (Transket_pyr)

(358-532)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

53.939

98.507

0.531