Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ICHIAU1_RS09000 Genome accession   NZ_AP022345
Coordinates   1813719..1815083 (-) Length   454 a.a.
NCBI ID   WP_162049811.1    Uniprot ID   A0A679HV60
Organism   Fluviibacter phosphoraccumulans strain ICHIAU1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1808719..1820083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICHIAU1_RS08985 (ICHIAU1_17620) - 1810543..1810941 (-) 399 WP_162049814.1 group II truncated hemoglobin -
  ICHIAU1_RS08990 (ICHIAU1_17630) mscL 1811002..1811454 (+) 453 WP_162049813.1 large conductance mechanosensitive channel protein MscL -
  ICHIAU1_RS08995 (ICHIAU1_17640) - 1811440..1813623 (-) 2184 WP_211149276.1 YgiQ family radical SAM protein -
  ICHIAU1_RS09000 (ICHIAU1_17650) radA 1813719..1815083 (-) 1365 WP_162049811.1 DNA repair protein RadA Machinery gene
  ICHIAU1_RS09005 (ICHIAU1_17660) alr 1815086..1816201 (-) 1116 WP_162049810.1 alanine racemase -
  ICHIAU1_RS09010 (ICHIAU1_17670) lplT 1816314..1817579 (+) 1266 WP_162049809.1 lysophospholipid transporter LplT -
  ICHIAU1_RS09015 (ICHIAU1_17680) - 1817614..1818309 (-) 696 WP_162049808.1 uracil-DNA glycosylase -
  ICHIAU1_RS09020 (ICHIAU1_17690) rimI 1818309..1818809 (-) 501 WP_162071334.1 ribosomal protein S18-alanine N-acetyltransferase -
  ICHIAU1_RS09025 (ICHIAU1_17700) tsaB 1818796..1819530 (-) 735 WP_162049806.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  ICHIAU1_RS09030 (ICHIAU1_17710) ispF 1819540..1820052 (-) 513 WP_162049805.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48274.71 Da        Isoelectric Point: 7.8843

>NTDB_id=77835 ICHIAU1_RS09000 WP_162049811.1 1813719..1815083(-) (radA) [Fluviibacter phosphoraccumulans strain ICHIAU1]
MAKAKALYICTECGSTQPKWQGQCPDCNAWNTLVETVAEKATASAHRFASLAPTTGVQPLGKVEAREAPRLTSGIDEFDR
VLGGGLVSGGVVLIGGDPGIGKSTLLLQCLAALSAKTPVLYVSGEESAEQIALRAQRLDVSAPDLPLYAEINLEKILKTL
EARQPRVAVIDSIQTLWSDALTSAPGSVAQVRECAAQLTRFAKQSGITLLFVGHVTKDGTLAGPRVLEHIVDTVLYFEGD
SHSSFRLVRAVKNRFGSVNELGVFAMTDRGLRAVTNPSALFLSRHPEPVPGASIVVTQEGTRPLLVEVQALVDQANAGHP
KRLTVGLESQRLSMLLAVLHRHVGIMVSDQDVYVNAVGGVRINEPAADLAVILSILSSFKNKPLNDKLCVFGEVGLTGEL
RPCPRGQERLKEAAKLGFTQALVPAANAPKTAIPGLEVIAVRRLDEAVSKAFGL

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=77835 ICHIAU1_RS09000 WP_162049811.1 1813719..1815083(-) (radA) [Fluviibacter phosphoraccumulans strain ICHIAU1]
ATGGCTAAAGCCAAAGCCCTCTACATCTGTACTGAATGTGGTTCTACTCAGCCTAAATGGCAGGGTCAGTGTCCTGACTG
CAATGCCTGGAATACGCTGGTGGAAACTGTTGCCGAAAAAGCAACGGCCAGCGCGCACCGCTTTGCCAGTTTAGCGCCAA
CCACGGGCGTGCAACCATTAGGCAAAGTAGAAGCACGTGAAGCGCCACGGTTGACCTCGGGTATTGATGAATTCGATCGC
GTTCTGGGGGGTGGCCTCGTCTCCGGCGGGGTGGTTTTGATTGGTGGTGACCCCGGCATTGGCAAAAGCACCCTGTTGTT
GCAGTGCCTGGCGGCCCTTTCTGCCAAGACGCCCGTGCTCTATGTCAGTGGGGAAGAGTCCGCCGAACAAATCGCCTTAC
GTGCGCAACGTCTGGATGTTTCTGCGCCTGATTTACCCCTCTATGCCGAAATCAATCTGGAAAAGATCCTCAAAACGCTT
GAGGCCCGCCAGCCTCGAGTTGCAGTAATCGATTCGATTCAAACCTTATGGTCTGATGCGCTCACCTCGGCGCCGGGTTC
GGTGGCACAGGTCAGGGAGTGTGCCGCGCAGCTCACGCGTTTTGCCAAACAGAGTGGCATTACCTTGCTCTTTGTAGGCC
ATGTGACCAAAGATGGCACGTTGGCCGGGCCGCGCGTCCTGGAACACATTGTGGATACCGTGCTCTATTTCGAAGGGGAT
TCGCATTCAAGCTTCCGGCTGGTGCGGGCTGTTAAAAACCGCTTTGGATCGGTGAATGAGCTGGGTGTATTTGCCATGAC
GGATCGCGGATTACGCGCCGTAACCAATCCGTCCGCATTATTTTTGTCACGGCATCCTGAGCCGGTACCCGGCGCTTCGA
TTGTGGTCACACAGGAAGGCACCCGCCCGTTACTGGTTGAAGTGCAAGCGCTGGTTGACCAGGCTAACGCCGGACACCCG
AAACGTTTAACCGTGGGTCTGGAGTCTCAGCGCCTGTCGATGCTGCTCGCTGTGCTGCATCGCCATGTAGGGATCATGGT
CAGCGATCAAGACGTCTACGTTAACGCGGTGGGCGGGGTGCGTATTAATGAGCCGGCAGCTGATCTGGCGGTTATCCTCT
CGATTTTGTCCTCGTTCAAAAACAAACCCCTGAACGACAAGCTCTGCGTGTTTGGTGAAGTGGGCTTGACCGGTGAATTA
CGCCCTTGCCCCCGTGGTCAGGAGCGGCTGAAAGAAGCTGCCAAGCTCGGTTTTACGCAGGCACTTGTTCCTGCGGCGAA
CGCCCCCAAAACAGCAATACCCGGGCTGGAAGTGATTGCCGTCCGGCGCCTTGATGAAGCCGTCAGCAAGGCTTTCGGAC
TTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-219)

Subunit ChlI of Mg-chelatase (ChlI)

(343-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A679HV60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.873

100

0.513
  radA Streptococcus pneumoniae Rx1

49.669

99.78

0.496
  radA Streptococcus pneumoniae D39

49.669

99.78

0.496
  radA Streptococcus pneumoniae R6

49.669

99.78

0.496
  radA Streptococcus pneumoniae TIGR4

49.669

99.78

0.496
  radA Streptococcus mitis NCTC 12261

49.669

99.78

0.496
  radA Streptococcus mitis SK321

49.669

99.78

0.496

Multiple sequence alignment