Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QYC34_RS17340 Genome accession   NZ_CP129338
Coordinates   3183931..3184641 (-) Length   236 a.a.
NCBI ID   WP_014480585.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM126725     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3178931..3189641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS17320 (QYC34_17320) cysK 3178983..3179918 (+) 936 WP_003229237.1 cysteine synthase A -
  QYC34_RS17325 (QYC34_17325) pepV 3179952..3181343 (-) 1392 WP_014480582.1 dipeptidase PepV -
  QYC34_RS17330 (QYC34_17330) pbuO 3181440..3182738 (+) 1299 WP_014480583.1 hypoxanthine/guanine permease PbuO -
  QYC34_RS17335 (QYC34_17335) ythQ 3182777..3183934 (-) 1158 WP_014480584.1 ABC transporter permease -
  QYC34_RS17340 (QYC34_17340) pptA 3183931..3184641 (-) 711 WP_014480585.1 ABC transporter ATP-binding protein Regulator
  QYC34_RS17345 (QYC34_17345) ytzE 3184931..3185152 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  QYC34_RS17350 (QYC34_17350) rsuA 3185274..3185993 (-) 720 WP_014480587.1 pseudouridine synthase -
  QYC34_RS17355 (QYC34_17355) murJ 3186062..3187696 (-) 1635 WP_014480588.1 lipid II flippase MurJ -
  QYC34_RS17360 (QYC34_17360) ytfP 3187899..3189161 (+) 1263 WP_003229222.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26545.69 Da        Isoelectric Point: 5.8478

>NTDB_id=778343 QYC34_RS17340 WP_014480585.1 3183931..3184641(-) (pptA) [Bacillus subtilis strain SRCM126725]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEGREFVHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=778343 QYC34_RS17340 WP_014480585.1 3183931..3184641(-) (pptA) [Bacillus subtilis strain SRCM126725]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGGGAGAGAATTTGTGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432