Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QYC34_RS14505 Genome accession   NZ_CP129338
Coordinates   2686636..2687046 (-) Length   136 a.a.
NCBI ID   WP_009967785.1    Uniprot ID   P42983
Organism   Bacillus subtilis strain SRCM126725     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2681636..2692046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS14475 (QYC34_14475) - 2681722..2681862 (+) 141 WP_003226124.1 sporulation histidine kinase inhibitor Sda -
  QYC34_RS14480 (QYC34_14480) yqeF 2682168..2682899 (-) 732 WP_003229964.1 SGNH/GDSL hydrolase family protein -
  QYC34_RS14485 (QYC34_14485) cwlH 2683151..2683903 (-) 753 WP_021480067.1 N-acetylmuramoyl-L-alanine amidase CwlH -
  QYC34_RS14490 (QYC34_14490) yqeD 2684090..2684716 (+) 627 WP_046160610.1 TVP38/TMEM64 family protein -
  QYC34_RS14495 (QYC34_14495) gnd 2684736..2685629 (-) 894 WP_046160611.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  QYC34_RS14500 (QYC34_14500) yqeB 2685881..2686603 (+) 723 WP_014480321.1 hypothetical protein -
  QYC34_RS14505 (QYC34_14505) nucA/comI 2686636..2687046 (-) 411 WP_009967785.1 sporulation-specific Dnase NucB Machinery gene
  QYC34_RS14510 (QYC34_14510) - 2687242..2687589 (+) 348 Protein_2806 sigma-70 family RNA polymerase sigma factor -
  QYC34_RS14515 (QYC34_14515) spoIVCA 2687620..2689080 (-) 1461 WP_223257626.1 site-specific DNA recombinase SpoIVCA -
  QYC34_RS14520 (QYC34_14520) - 2689038..2689216 (-) 179 Protein_2808 hypothetical protein -
  QYC34_RS14525 (QYC34_14525) arsC 2689571..2689990 (-) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  QYC34_RS14530 (QYC34_14530) acr3 2690002..2691042 (-) 1041 WP_032722149.1 arsenite efflux transporter Acr3 -
  QYC34_RS14535 (QYC34_14535) arsK 2691065..2691505 (-) 441 WP_032722151.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  QYC34_RS14540 (QYC34_14540) arsR 2691564..2691881 (-) 318 WP_029318103.1 arsenical resistance operon transcriptional regulator ArsR -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14967.97 Da        Isoelectric Point: 5.1853

>NTDB_id=778326 QYC34_RS14505 WP_009967785.1 2686636..2687046(-) (nucA/comI) [Bacillus subtilis strain SRCM126725]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=778326 QYC34_RS14505 WP_009967785.1 2686636..2687046(-) (nucA/comI) [Bacillus subtilis strain SRCM126725]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGAGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAG

Domains

Predicted by InterProScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42983

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.609

84.559

0.529