Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QYC34_RS13920 Genome accession   NZ_CP129338
Coordinates   2587937..2588272 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0ABU0V3E1
Organism   Bacillus subtilis strain SRCM126725     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2582937..2593272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS13900 (QYC34_13900) gcvT 2583528..2584616 (-) 1089 WP_038829737.1 glycine cleavage system aminomethyltransferase GcvT -
  QYC34_RS13905 (QYC34_13905) hepAA 2585058..2586731 (+) 1674 WP_038829735.1 DEAD/DEAH box helicase -
  QYC34_RS13910 (QYC34_13910) yqhG 2586752..2587546 (+) 795 WP_046160581.1 YqhG family protein -
  QYC34_RS13915 (QYC34_13915) sinI 2587730..2587903 (+) 174 WP_014477323.1 anti-repressor SinI Regulator
  QYC34_RS13920 (QYC34_13920) sinR 2587937..2588272 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  QYC34_RS13925 (QYC34_13925) tasA 2588364..2589149 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  QYC34_RS13930 (QYC34_13930) sipW 2589214..2589786 (-) 573 WP_003230181.1 signal peptidase I SipW -
  QYC34_RS13935 (QYC34_13935) tapA 2589770..2590531 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  QYC34_RS13940 (QYC34_13940) yqzG 2590803..2591129 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  QYC34_RS13945 (QYC34_13945) spoIITA 2591171..2591350 (-) 180 WP_029726723.1 YqzE family protein -
  QYC34_RS13950 (QYC34_13950) comGG 2591422..2591796 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  QYC34_RS13955 (QYC34_13955) comGF 2591797..2592180 (-) 384 WP_046160582.1 ComG operon protein ComGF Machinery gene
  QYC34_RS13960 (QYC34_13960) comGE 2592206..2592553 (-) 348 WP_046160583.1 ComG operon protein 5 Machinery gene
  QYC34_RS13965 (QYC34_13965) comGD 2592537..2592968 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  QYC34_RS13970 (QYC34_13970) comGC 2592958..2593254 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=778314 QYC34_RS13920 WP_003226345.1 2587937..2588272(+) (sinR) [Bacillus subtilis strain SRCM126725]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=778314 QYC34_RS13920 WP_003226345.1 2587937..2588272(+) (sinR) [Bacillus subtilis strain SRCM126725]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1