Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   QYC34_RS13085 Genome accession   NZ_CP129338
Coordinates   2440112..2441602 (-) Length   496 a.a.
NCBI ID   WP_046160518.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM126725     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2435112..2446602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS13055 (QYC34_13055) gudB 2435257..2436531 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  QYC34_RS13060 (QYC34_13060) mecB 2436687..2437271 (-) 585 WP_046160514.1 genetic competence negative regulator -
  QYC34_RS13065 (QYC34_13065) ypbG 2437430..2438209 (-) 780 WP_046160515.1 metallophosphoesterase -
  QYC34_RS13070 (QYC34_13070) ypbF 2438295..2438738 (-) 444 WP_046160516.1 YpbF family protein -
  QYC34_RS13075 (QYC34_13075) claE 2438801..2439532 (-) 732 WP_046160517.1 LysM peptidoglycan-binding domain-containing protein -
  QYC34_RS13080 (QYC34_13080) ypbD 2439483..2440085 (-) 603 WP_014477208.1 CPBP family intramembrane glutamic endopeptidase -
  QYC34_RS13085 (QYC34_13085) recS 2440112..2441602 (-) 1491 WP_046160518.1 ATP-dependent DNA helicase RecQ Machinery gene
  QYC34_RS13090 (QYC34_13090) gmmB 2441595..2442653 (-) 1059 WP_014480149.1 helix-turn-helix domain-containing protein -
  QYC34_RS13095 (QYC34_13095) fdxA 2442919..2443167 (+) 249 WP_003225461.1 ferredoxin -
  QYC34_RS13100 (QYC34_13100) fmnP 2443207..2443779 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  QYC34_RS13105 (QYC34_13105) serA 2444276..2445853 (+) 1578 WP_046160519.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56477.04 Da        Isoelectric Point: 6.5039

>NTDB_id=778308 QYC34_RS13085 WP_046160518.1 2440112..2441602(-) (recS) [Bacillus subtilis strain SRCM126725]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQYAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGARSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=778308 QYC34_RS13085 WP_046160518.1 2440112..2441602(-) (recS) [Bacillus subtilis strain SRCM126725]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCGCTGCTTTCTTTAATGGAGGATCAGGTGCAACAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTAAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAGGCTTTACAGTCTCCATATGTGTTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTCGA
GCTGCAGTATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCTGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTGTCCTAGAAAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGGAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGCACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.395

100

0.994