Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QYC34_RS12035 Genome accession   NZ_CP129338
Coordinates   2262331..2264106 (-) Length   591 a.a.
NCBI ID   WP_046160493.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM126725     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2257331..2269106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS12015 (QYC34_12015) desE 2257704..2258762 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  QYC34_RS12020 (QYC34_12020) desK 2258882..2259994 (+) 1113 WP_046160491.1 two-component sensor histidine kinase DesK -
  QYC34_RS12025 (QYC34_12025) desR 2260013..2260612 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  QYC34_RS12030 (QYC34_12030) walN 2261220..2262083 (-) 864 WP_046160492.1 LysM peptidoglycan-binding and 3D domain-containing protein -
  QYC34_RS12035 (QYC34_12035) recQ 2262331..2264106 (-) 1776 WP_046160493.1 DNA helicase RecQ Machinery gene
  QYC34_RS12045 (QYC34_12045) azoJ 2264672..2265298 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  QYC34_RS12050 (QYC34_12050) stpP 2265450..2265941 (-) 492 WP_014477068.1 TraR/DksA family transcriptional regulator -
  QYC34_RS12055 (QYC34_12055) - 2266016..2266348 (-) 333 WP_014480020.1 hypothetical protein -
  QYC34_RS12060 (QYC34_12060) - 2266426..2266653 (+) 228 WP_021481463.1 hypothetical protein -
  QYC34_RS12065 (QYC34_12065) yocM 2266640..2267116 (-) 477 WP_014477071.1 salt stress-responsive protein YocM -
  QYC34_RS12070 (QYC34_12070) - 2267183..2267446 (+) 264 WP_004399338.1 hypothetical protein -
  QYC34_RS12075 (QYC34_12075) - 2267451..2267684 (+) 234 WP_003231251.1 hypothetical protein -
  QYC34_RS12080 (QYC34_12080) yozO 2267777..2268121 (-) 345 WP_003220141.1 PH domain-containing protein -
  QYC34_RS12085 (QYC34_12085) yozC 2268478..2268681 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67355.79 Da        Isoelectric Point: 6.2902

>NTDB_id=778305 QYC34_RS12035 WP_046160493.1 2262331..2264106(-) (recQ) [Bacillus subtilis strain SRCM126725]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDERKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPNACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAADQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=778305 QYC34_RS12035 WP_046160493.1 2262331..2264106(-) (recQ) [Bacillus subtilis strain SRCM126725]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCAG
CATTAATGTTTGAAGGGACGACGATCGTCATATCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATTTATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAGGTCAGGGCAGGCCGGTATCACGGAGGTTTGGCTGATGA
TGAGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATTAGATTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGCCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTCCAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTAATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCAGACCTCTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGCGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGTAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGATC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(21-182)

RQC domain (RQC)

(403-507)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

HRDC domain (HRDC)

(518-583)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.323

100

0.993