Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   QYC34_RS10690 Genome accession   NZ_CP129338
Coordinates   2025164..2025595 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain SRCM126725     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2020164..2030595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS10670 (QYC34_10670) spoVS 2020726..2020986 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  QYC34_RS10675 (QYC34_10675) tdh 2021251..2022294 (+) 1044 WP_046160417.1 L-threonine 3-dehydrogenase -
  QYC34_RS10680 (QYC34_10680) kbl 2022307..2023485 (+) 1179 WP_014664025.1 glycine C-acetyltransferase -
  QYC34_RS10685 (QYC34_10685) miaB 2023633..2025162 (+) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  QYC34_RS10690 (QYC34_10690) ymcA 2025164..2025595 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  QYC34_RS10695 (QYC34_10695) cotE 2025857..2026402 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  QYC34_RS10700 (QYC34_10700) hexA 2026535..2029111 (+) 2577 WP_046160418.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=778299 QYC34_RS10690 WP_003231834.1 2025164..2025595(+) (ymcA) [Bacillus subtilis strain SRCM126725]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=778299 QYC34_RS10690 WP_003231834.1 2025164..2025595(+) (ymcA) [Bacillus subtilis strain SRCM126725]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1