Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   QYC34_RS03800 Genome accession   NZ_CP129338
Coordinates   723721..724155 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM126725     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 718721..729155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS03770 (QYC34_03770) ydaD 719368..720228 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  QYC34_RS03775 (QYC34_03775) lyxE 720244..720747 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  QYC34_RS03780 (QYC34_03780) ydaF 720835..721386 (+) 552 WP_014478866.1 GNAT family protein -
  QYC34_RS03785 (QYC34_03785) ydaG 721464..721886 (+) 423 WP_014478867.1 pyridoxamine 5'-phosphate oxidase family protein -
  QYC34_RS03790 (QYC34_03790) amj 722392..723201 (+) 810 WP_014478868.1 lipid II flippase Amj -
  QYC34_RS03795 (QYC34_03795) ydzA 723246..723536 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  QYC34_RS03800 (QYC34_03800) lrpC 723721..724155 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  QYC34_RS03805 (QYC34_03805) topB 724220..726403 (+) 2184 WP_046160064.1 DNA topoisomerase III -
  QYC34_RS03810 (QYC34_03810) ephJ 726605..727693 (+) 1089 WP_046160065.1 hypothetical protein -
  QYC34_RS03815 (QYC34_03815) epsK 727674..728525 (+) 852 WP_046160066.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=778250 QYC34_RS03800 WP_003246585.1 723721..724155(+) (lrpC) [Bacillus subtilis strain SRCM126725]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=778250 QYC34_RS03800 WP_003246585.1 723721..724155(+) (lrpC) [Bacillus subtilis strain SRCM126725]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1