Detailed information NTG0778238

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: QYC34_RS03025
• Genome accession: NZ_CP129338
• Coordinates: 550476..551597 (+)
• Length: 373 a.a.
• NCBI ID: WP_003234740.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain SRCM126725
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 545476..556597

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYC34_RS03000 (QYC34_03000)	ycdA	545484..546548 (-)	1065	WP_003234750.1	DUF4352 domain-containing protein	-
QYC34_RS03005 (QYC34_03005)	-	546571..546702 (-)	132	WP_003246334.1	hypothetical protein	-
QYC34_RS03010 (QYC34_03010)	ycdB	546876..548294 (+)	1419	WP_046160021.1	YcdB/YcdC domain-containing protein	-
QYC34_RS03015 (QYC34_03015)	ycdC	548481..549842 (+)	1362	WP_046160119.1	YcdB/YcdC domain-containing protein	-
QYC34_RS03020 (QYC34_03020)	cwlK	549850..550353 (-)	504	WP_046160022.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
QYC34_RS03025 (QYC34_03025)	rapF	550476..551597 (+)	1122	WP_003234740.1	response regulator aspartate phosphatase RapJ	Regulator
QYC34_RS03030 (QYC34_03030)	ycdF	551706..552482 (+)	777	WP_003234739.1	SDR family oxidoreductase	-
QYC34_RS03035 (QYC34_03035)	ycdG	552507..554192 (+)	1686	WP_046160023.1	alpha-glucosidase	-
QYC34_RS03040 (QYC34_03040)	znuA	554380..555339 (+)	960	WP_029317219.1	metal ABC transporter substrate-binding protein	-
QYC34_RS03045 (QYC34_03045)	znuC	555394..556089 (+)	696	WP_014475714.1	zinc ABC transporter ATP-binding protein ZnuC	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44427.31 Da
• Isoelectric Point: 4.8344

>NTDB_id=778238 QYC34_RS03025 WP_003234740.1 550476..551597(+) (rapF) [Bacillus subtilis strain SRCM126725]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGNGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=778238 QYC34_RS03025 WP_003234740.1 550476..551597(+) (rapF) [Bacillus subtilis strain SRCM126725]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATACGATTTAGAAGATATGGAAGAGAACCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCATTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTATTGGAATATTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATTGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATCAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGCCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGATCATGCCAGGCAGCTTG
AAGAAGCGTACATGATCGCCGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGATTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAAGCAGTAGAGGCGTATGACCGCGGGATAAAGAGCGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAACGGTGACCTGAACGTGCTTACAGAATGC
TTTGACCTGCTGGAATCCAGGCAGCTTCTTGCAGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGCT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGATGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405