Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   QYC34_RS01490 Genome accession   NZ_CP129338
Coordinates   278015..278245 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain SRCM126725     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 273015..283245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS01460 (QYC34_01460) ridA 273179..273556 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  QYC34_RS01465 (QYC34_01465) spoVG 273751..274044 (+) 294 WP_003218346.1 septation regulator SpoVG -
  QYC34_RS01470 (QYC34_01470) glmU 274237..275607 (+) 1371 WP_017696375.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  QYC34_RS01475 (QYC34_01475) prsS 275630..276583 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  QYC34_RS01480 (QYC34_01480) rplYB 276668..277282 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  QYC34_RS01485 (QYC34_01485) pth 277389..277955 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  QYC34_RS01490 (QYC34_01490) subA/fin 278015..278245 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  QYC34_RS01495 (QYC34_01495) mfd 278315..281848 (+) 3534 WP_153952902.1 transcription-repair coupling factor -
  QYC34_RS01500 (QYC34_01500) spoVT 281984..282520 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=778232 QYC34_RS01490 WP_003243417.1 278015..278245(+) (subA/fin) [Bacillus subtilis strain SRCM126725]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=778232 QYC34_RS01490 WP_003243417.1 278015..278245(+) (subA/fin) [Bacillus subtilis strain SRCM126725]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1