Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   QYC34_RS00480 Genome accession   NZ_CP129338
Coordinates   91952..92641 (-) Length   229 a.a.
NCBI ID   WP_046161048.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM126725     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 86952..97641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS00460 (QYC34_00460) yxeA 87857..88204 (-) 348 WP_046161045.1 YxeA family protein -
  QYC34_RS00465 (QYC34_00465) yxdM 88218..90086 (-) 1869 WP_046161046.1 ABC transporter permease YxdM -
  QYC34_RS00470 (QYC34_00470) yxdL 90061..90834 (-) 774 WP_003243557.1 ABC transporter ATP-binding protein YxdL -
  QYC34_RS00475 (QYC34_00475) yxdK 90978..91955 (-) 978 WP_046161047.1 two-component system sensor histidine kinase YxdK -
  QYC34_RS00480 (QYC34_00480) braR 91952..92641 (-) 690 WP_046161048.1 two-component system response regulator YxdJ Regulator
  QYC34_RS00485 (QYC34_00485) iolJ 92749..93621 (-) 873 WP_046161049.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  QYC34_RS00490 (QYC34_00490) iolI 93642..94478 (-) 837 WP_015250853.1 2-keto-myo-inositol isomerase -
  QYC34_RS00495 (QYC34_00495) iolH 94564..95433 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase family protein -
  QYC34_RS00500 (QYC34_00500) iolG 95453..96487 (-) 1035 WP_015250851.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26572.29 Da        Isoelectric Point: 4.8564

>NTDB_id=778222 QYC34_RS00480 WP_046161048.1 91952..92641(-) (braR) [Bacillus subtilis strain SRCM126725]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDAFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=778222 QYC34_RS00480 WP_046161048.1 91952..92641(-) (braR) [Bacillus subtilis strain SRCM126725]
TTGAATAAAATTATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGCCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAAATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406