Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   QYH60_RS09275 Genome accession   NZ_CP129292
Coordinates   1842268..1843323 (+) Length   351 a.a.
NCBI ID   WP_301400827.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain KMGR2-43     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1837268..1848323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH60_RS09255 (QYH60_09255) - 1838719..1839045 (+) 327 WP_301400818.1 hypothetical protein -
  QYH60_RS09260 (QYH60_09260) recA 1839060..1840085 (+) 1026 WP_301400820.1 recombinase RecA -
  QYH60_RS09265 (QYH60_09265) - 1840215..1841420 (+) 1206 WP_301400823.1 AbiH family protein -
  QYH60_RS09270 (QYH60_09270) - 1841483..1841728 (-) 246 WP_301400825.1 hypothetical protein -
  QYH60_RS09275 (QYH60_09275) xerS 1842268..1843323 (+) 1056 WP_301400827.1 tyrosine recombinase XerS Machinery gene
  QYH60_RS09280 (QYH60_09280) - 1843407..1843694 (+) 288 WP_259683636.1 hypothetical protein -
  QYH60_RS09285 (QYH60_09285) xerS 1844178..1845248 (+) 1071 WP_195228624.1 tyrosine recombinase XerS Machinery gene
  QYH60_RS09290 (QYH60_09290) trmFO 1845293..1846636 (-) 1344 WP_025017071.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40770.41 Da        Isoelectric Point: 9.3101

>NTDB_id=778203 QYH60_RS09275 WP_301400827.1 1842268..1843323(+) (xerS) [Lactococcus lactis subsp. lactis strain KMGR2-43]
MSENHGYQYNVNKLMLEFPNYVNEYIQSKRVVPLSEASIYEYCLDFRKYLQWLIDRSITNHNQIKEITLQELENVSKHEL
EDFVLHERLRLESKCGSNTHTSALNRTIAAIKSLYNYLCEQTEDEHGNTYMTRNVSRLIRIRKKSETLHYRAAQLEGKLF
LGDETKAFLEFVEHDYEKSVSNRARTSFKKNKIRDLAILSLFLSSGLRCAELVGINLDDLNLETGKVSVMRKEGKKDVVP
IAHFSHKYINEYFVTRSSIDTEIQAFFITDYDQKIRKISNASINKLVAKYSKAYKVRVTPHTLRHTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALNKL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=778203 QYH60_RS09275 WP_301400827.1 1842268..1843323(+) (xerS) [Lactococcus lactis subsp. lactis strain KMGR2-43]
ATGTCAGAAAACCATGGTTATCAATACAATGTTAATAAACTAATGCTAGAATTTCCAAATTATGTTAACGAATATATTCA
ATCGAAAAGAGTTGTTCCGCTGAGTGAAGCGTCAATATATGAATATTGCTTAGACTTTAGAAAGTACCTCCAATGGCTCA
TTGATCGTAGTATAACAAATCATAATCAAATCAAAGAAATTACCTTGCAAGAATTAGAAAATGTAAGCAAACATGAATTG
GAGGACTTTGTGTTACATGAGAGACTACGTTTGGAATCTAAATGTGGGTCAAATACACATACTTCAGCATTGAATCGAAC
CATTGCAGCGATTAAGAGCCTATATAATTATCTTTGTGAACAAACTGAGGATGAACACGGAAATACATACATGACTAGAA
ATGTCAGTCGTTTAATTCGTATCCGAAAAAAGAGCGAAACTTTGCATTACCGTGCGGCTCAACTGGAAGGTAAACTATTC
CTAGGAGACGAAACCAAAGCCTTTTTAGAATTTGTTGAACATGACTATGAAAAATCTGTCAGTAACCGTGCAAGAACAAG
TTTCAAAAAAAATAAAATCAGGGATTTAGCTATATTAAGTCTTTTTTTATCTTCTGGGTTACGTTGTGCGGAACTTGTAG
GGATTAATCTTGACGATTTAAACCTTGAAACTGGGAAGGTAAGTGTGATGAGAAAAGAGGGGAAAAAGGATGTTGTCCCG
ATTGCCCACTTTTCACACAAATATATAAATGAATATTTTGTGACAAGAAGTAGCATTGATACTGAGATACAAGCGTTTTT
CATCACAGATTACGACCAAAAAATAAGAAAAATCTCGAACGCTTCAATAAATAAGCTAGTGGCGAAGTATTCAAAAGCCT
ATAAAGTTCGTGTAACACCTCATACACTAAGGCATACTTTTGCAACGAGGCTCTATAATGTCAGTCACTCACAAGTTCTT
GTCAGCAACCAATTAGGGCATTCATCAACTAAACCTACAGAACTATATACCCACATTGTCAGTGCTGAAGCTAAAGATGC
ATTAAACAAGTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(186-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

45.17

100

0.453