Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   QYH60_RS09045 Genome accession   NZ_CP129292
Coordinates   1782869..1783399 (+) Length   176 a.a.
NCBI ID   WP_301400759.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain KMGR2-43     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1777869..1788399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH60_RS09010 (QYH60_09010) - 1777880..1778335 (+) 456 WP_058208608.1 MarR family transcriptional regulator -
  QYH60_RS09015 (QYH60_09015) - 1778336..1778869 (+) 534 WP_058204436.1 GNAT family N-acetyltransferase -
  QYH60_RS09020 (QYH60_09020) - 1778888..1779589 (+) 702 WP_301400753.1 phenylalanine--tRNA ligase beta subunit-related protein -
  QYH60_RS09025 (QYH60_09025) - 1779561..1780763 (+) 1203 WP_081042676.1 MFS transporter -
  QYH60_RS09030 (QYH60_09030) - 1780847..1781668 (+) 822 WP_058204438.1 dihydrodipicolinate synthase family protein -
  QYH60_RS09035 (QYH60_09035) - 1781994..1782125 (+) 132 WP_301400755.1 hypothetical protein -
  QYH60_RS09040 (QYH60_09040) - 1782344..1782826 (+) 483 WP_301400757.1 hypothetical protein -
  QYH60_RS09045 (QYH60_09045) xerS 1782869..1783399 (+) 531 WP_301400759.1 tyrosine-type recombinase/integrase Machinery gene
  QYH60_RS09050 (QYH60_09050) - 1783484..1783771 (+) 288 WP_015426413.1 hypothetical protein -
  QYH60_RS09055 (QYH60_09055) - 1784616..1785407 (+) 792 WP_301400763.1 hypothetical protein -
  QYH60_RS09060 (QYH60_09060) - 1785658..1786089 (+) 432 WP_058203271.1 hypothetical protein -
  QYH60_RS09065 (QYH60_09065) - 1786082..1786951 (+) 870 WP_301400765.1 ParA family protein -
  QYH60_RS09070 (QYH60_09070) - 1787152..1787478 (+) 327 WP_282799038.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19912.23 Da        Isoelectric Point: 10.6583

>NTDB_id=778201 QYH60_RS09045 WP_301400759.1 1782869..1783399(+) (xerS) [Lactococcus lactis subsp. lactis strain KMGR2-43]
MKSLSVIVRKQVSKKIKKRDLAILSLFLSSGLRCAELVGINLNDLNLETGKVRVMRKEGKKDVVPIAHFSHKYITDYFEA
RSSIDTEVQALFITDYNQKIRKISNASINKLVAKYSVAYKVRVTPHTLRHTFATRLYNVSHSQVLVSNQLGHSSTKPTEL
YTHIVSAEAKDALKKL

Nucleotide


Download         Length: 531 bp        

>NTDB_id=778201 QYH60_RS09045 WP_301400759.1 1782869..1783399(+) (xerS) [Lactococcus lactis subsp. lactis strain KMGR2-43]
ATGAAAAGTCTATCAGTAATCGTGCGAAAACAAGTTTCAAAAAAAATAAAAAAAAGAGATTTAGCCATACTAAGCCTCTT
TTTATCTTCTGGATTACGTTGTGCAGAACTTGTAGGGATCAATCTCAATGATTTAAACCTTGAAACTGGGAAAGTGAGAG
TGATGCGAAAAGAAGGCAAGAAAGATGTAGTGCCTATTGCTCATTTTTCGCATAAGTATATAACAGATTATTTTGAGGCA
AGAAGTAGCATAGATACTGAAGTTCAAGCCTTATTCATCACAGATTACAACCAAAAAATAAGAAAAATATCAAATGCTTC
GATAAATAAGCTAGTAGCAAAGTATTCAGTAGCTTATAAAGTACGAGTGACACCTCATACACTAAGGCATACATTCGCAA
CAAGACTTTATAATGTCAGTCACTCCCAAGTCCTTGTCAGCAACCAATTAGGACATTCCTCAACCAAACCAACTGAGTTA
TATACCCATATTGTCAGTGCTGAAGCTAAAGATGCGTTAAAAAAGTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(15-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

51.19

95.455

0.489