Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   QYH60_RS06160 Genome accession   NZ_CP129292
Coordinates   1160928..1161599 (+) Length   223 a.a.
NCBI ID   WP_003132782.1    Uniprot ID   Q9CET7
Organism   Lactococcus lactis subsp. lactis strain KMGR2-43     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1155928..1166599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH60_RS06135 (QYH60_06135) - 1156357..1156716 (+) 360 WP_010906119.1 YxeA family protein -
  QYH60_RS06140 (QYH60_06140) - 1156747..1156890 (+) 144 WP_201013237.1 hypothetical protein -
  QYH60_RS06145 (QYH60_06145) - 1156905..1157684 (+) 780 WP_012898329.1 ABC transporter ATP-binding protein -
  QYH60_RS06150 (QYH60_06150) - 1157677..1159680 (+) 2004 WP_033899972.1 ABC transporter permease -
  QYH60_RS06155 (QYH60_06155) - 1159861..1160925 (+) 1065 WP_023188544.1 VanZ family protein -
  QYH60_RS06160 (QYH60_06160) braR 1160928..1161599 (+) 672 WP_003132782.1 response regulator transcription factor Regulator
  QYH60_RS06165 (QYH60_06165) - 1161586..1162461 (+) 876 WP_301536147.1 sensor histidine kinase -
  QYH60_RS06170 (QYH60_06170) - 1162464..1163528 (+) 1065 WP_010906116.1 prephenate dehydrogenase -
  QYH60_RS06175 (QYH60_06175) aroA 1163649..1164941 (+) 1293 WP_023188546.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  QYH60_RS06180 (QYH60_06180) - 1164965..1165453 (+) 489 WP_017864896.1 shikimate kinase -
  QYH60_RS06185 (QYH60_06185) pheA 1165455..1166294 (+) 840 WP_023188548.1 prephenate dehydratase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25510.44 Da        Isoelectric Point: 4.8093

>NTDB_id=778186 QYH60_RS06160 WP_003132782.1 1160928..1161599(+) (braR) [Lactococcus lactis subsp. lactis strain KMGR2-43]
MTKIFIVEDDEIIVKAIKIALEKEFQVRSVSNFRAVKQEIMEFEADLVLMDIGLPFYSGFYWTNELRKLSQIPIIFISSA
SDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIEKLEFAGYVLSENTLISTQEGEREEIELTSSENKIL
TLLFRGNGEVVTKEKILQELWQTDEFIDANTLNVKMTRLRKKLGEIGFDKHIMTKRGSGYALV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=778186 QYH60_RS06160 WP_003132782.1 1160928..1161599(+) (braR) [Lactococcus lactis subsp. lactis strain KMGR2-43]
ATGACTAAAATATTTATTGTAGAAGATGATGAAATTATTGTGAAAGCAATTAAGATTGCCTTAGAAAAAGAATTTCAAGT
CAGAAGTGTTTCCAATTTTCGAGCAGTAAAACAAGAAATTATGGAATTTGAAGCAGATTTAGTATTAATGGATATTGGGC
TACCATTTTATAGTGGTTTTTATTGGACAAATGAATTAAGAAAGCTTTCCCAAATTCCTATTATCTTTATTTCTTCGGCA
TCGGATGATATGAATCAAGTAACCGCCATGAATCAAGGAGCTGATGATTTTGTAACTAAGCCATTTTCATTAGAAATTTT
AAATGCAAAAATAAAAGCTTTACTGCGCAGAAGTTATTCTTTTTCAGGGATTGAAAAGTTAGAATTTGCTGGTTATGTTT
TATCTGAAAATACTTTGATTTCAACTCAAGAAGGTGAACGCGAAGAAATTGAGCTAACAAGTTCTGAAAATAAAATTTTA
ACTCTTCTTTTTCGTGGAAATGGTGAAGTGGTGACCAAGGAAAAAATTCTACAAGAGTTGTGGCAAACAGATGAATTTAT
TGATGCAAATACTTTAAATGTAAAAATGACTCGTTTACGCAAAAAACTTGGTGAAATTGGCTTTGATAAGCATATTATGA
CAAAAAGAGGAAGTGGTTATGCTCTGGTTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-222)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CET7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.441

99.552

0.413