Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QYH60_RS05835 Genome accession   NZ_CP129292
Coordinates   1091148..1092926 (-) Length   592 a.a.
NCBI ID   WP_012898369.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain KMGR2-43     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1086148..1097926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH60_RS05815 (QYH60_05815) - 1086295..1087239 (+) 945 WP_003130319.1 manganese-dependent inorganic pyrophosphatase -
  QYH60_RS05820 (QYH60_05820) - 1087239..1088036 (+) 798 WP_023189056.1 DUF1803 domain-containing protein -
  QYH60_RS05825 (QYH60_05825) pepT 1088065..1089306 (+) 1242 WP_003130321.1 peptidase T -
  QYH60_RS05830 (QYH60_05830) yjeM 1089586..1091112 (+) 1527 WP_023189054.1 glutamate/gamma-aminobutyrate family transporter YjeM -
  QYH60_RS05835 (QYH60_05835) recQ 1091148..1092926 (-) 1779 WP_012898369.1 DNA helicase RecQ Machinery gene
  QYH60_RS05840 (QYH60_05840) adhP 1093122..1094143 (+) 1022 Protein_1102 alcohol dehydrogenase AdhP -
  QYH60_RS05845 (QYH60_05845) - 1094164..1094424 (+) 261 WP_012898367.1 hypothetical protein -
  QYH60_RS05850 (QYH60_05850) - 1094503..1095954 (-) 1452 WP_003130330.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  QYH60_RS05855 (QYH60_05855) - 1096164..1097837 (+) 1674 WP_301401550.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 66881.77 Da        Isoelectric Point: 6.2103

>NTDB_id=778182 QYH60_RS05835 WP_012898369.1 1091148..1092926(-) (recQ) [Lactococcus lactis subsp. lactis strain KMGR2-43]
MNLEAKLKEIFGYDNFRNGQKQIIEQVLDGQATLGILPTGAGKSICYQLPALIQPGLTLVISPLISLMKDQVDQLNIAGI
PATFINSTLEDSESYQRMRQVENGEIKLLFVAPERFSLDYFNAFLQKLPIDLVAIDEAHCISQWGHDFRPSYVDFASHLQ
YLPTNPTVLALTATATPKVADDIQKLLSISPSHTIKTGFLRENLRFEVVKGMDKRTFLKNYLKNQESEAAGIIYASTRKE
VEEICEWLNHNHFKAVRYHAGLSEQERQINQELFLFDEVPIMVATNAFGMGINKPNVRFVIHYALPATIESYYQEAGRAG
RDGLESDAILLFSPNDLRIRNFLIEQGEGDEAHKEHEYEKLRQMQAYTSAETCLQRYILQYFGDEGEDCKKCSNCLDERE
LLDITIDAQKVLSCVVRMGERFGKTAVAQVLIGSKNKNIAKWNFESLSTFGIMKNHSQKTVGELIDFLSAESYLNITSGK
FPLLLISAQGLKVLKGQIKVYRKASLIIESKTKISHHFDEECFASIRALRLELAKEEGVPPFMIFSDSALKEMAQVLPDS
PSQFLQISGVGPVKLEKYGRLFIDKISEYKKS

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=778182 QYH60_RS05835 WP_012898369.1 1091148..1092926(-) (recQ) [Lactococcus lactis subsp. lactis strain KMGR2-43]
ATGAATTTAGAAGCTAAATTAAAAGAAATTTTTGGTTATGACAATTTCCGAAATGGTCAGAAACAAATTATTGAACAAGT
CCTAGATGGACAAGCCACTCTTGGTATTTTACCCACAGGAGCTGGAAAATCAATCTGCTATCAGTTACCAGCTCTTATTC
AACCAGGGCTTACTCTCGTAATCTCCCCACTTATTAGCTTGATGAAAGATCAAGTCGACCAGCTGAATATTGCCGGAATT
CCAGCAACATTTATTAACTCTACCTTAGAGGATTCCGAATCTTATCAAAGAATGCGACAGGTTGAAAATGGCGAAATCAA
GCTTCTTTTTGTAGCACCAGAGCGTTTTTCATTAGACTATTTCAATGCCTTTTTACAAAAACTTCCAATTGATTTAGTTG
CCATAGACGAAGCACACTGCATTTCACAATGGGGGCACGATTTCAGACCCAGTTATGTCGATTTTGCCTCTCATCTCCAA
TATTTACCAACAAATCCTACCGTCTTAGCCCTTACGGCTACTGCGACACCAAAAGTTGCAGATGATATTCAAAAACTTCT
TTCAATTTCCCCCAGTCATACTATTAAAACCGGTTTTCTTAGAGAAAACTTACGTTTTGAAGTAGTCAAAGGGATGGATA
AGAGAACTTTTCTTAAAAATTATCTTAAAAATCAAGAAAGTGAGGCTGCTGGAATTATCTATGCCAGCACTCGTAAAGAA
GTTGAAGAAATTTGTGAATGGCTCAACCATAATCATTTCAAAGCCGTTCGTTACCATGCTGGACTGAGCGAACAGGAACG
TCAAATAAATCAAGAACTTTTTCTCTTTGACGAAGTACCGATAATGGTTGCCACTAATGCTTTTGGCATGGGAATCAATA
AACCAAATGTTCGATTTGTGATTCATTATGCCCTTCCCGCAACAATTGAAAGTTATTATCAAGAAGCTGGGCGAGCAGGA
CGGGACGGGCTTGAATCTGATGCTATCCTCCTTTTTTCACCAAATGATTTACGAATTCGTAATTTCTTGATTGAGCAAGG
TGAAGGTGATGAAGCGCACAAGGAACATGAATACGAAAAGCTTCGACAAATGCAAGCATACACAAGTGCCGAAACCTGTT
TGCAACGCTATATCTTGCAATATTTTGGTGATGAAGGTGAAGATTGTAAAAAGTGTAGTAATTGTCTTGATGAAAGAGAA
CTTCTCGATATTACAATTGATGCTCAAAAAGTCCTATCTTGTGTCGTCCGAATGGGTGAACGTTTTGGTAAGACGGCCGT
AGCACAAGTTTTGATTGGTTCTAAAAATAAAAATATTGCAAAATGGAATTTTGAATCTCTATCGACTTTTGGAATTATGA
AAAACCATTCCCAAAAAACCGTGGGTGAATTAATCGATTTTCTATCTGCTGAAAGTTATTTAAACATTACATCAGGTAAA
TTCCCACTTCTCCTTATTTCAGCCCAAGGATTAAAAGTCCTCAAAGGACAAATCAAAGTTTATCGCAAAGCTAGCTTAAT
TATTGAATCGAAAACAAAAATCTCTCATCATTTTGATGAAGAATGTTTTGCAAGTATTCGTGCACTTCGACTTGAACTAG
CCAAGGAAGAAGGCGTCCCTCCTTTCATGATTTTTTCTGATAGTGCCCTTAAAGAAATGGCTCAAGTTCTGCCGGATAGT
CCAAGTCAATTTTTACAAATTTCTGGTGTCGGACCTGTTAAACTCGAAAAATATGGAAGGCTTTTTATCGACAAAATATC
TGAATATAAAAAAAGCTGA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(520-584)

DEAD/DEAH box helicase (DEAD)

(19-179)

RQC domain (RQC)

(399-503)

Helicase conserved C-terminal domain (Helicase_C)

(214-322)

RecQ zinc-binding (RecQ_Zn_bind)

(335-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

51.107

99.155

0.507