Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QYH60_RS04690 Genome accession   NZ_CP129292
Coordinates   881548..882318 (+) Length   256 a.a.
NCBI ID   WP_004254655.1    Uniprot ID   Q9CE51
Organism   Lactococcus lactis subsp. lactis strain KMGR2-43     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 876548..887318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH60_RS04660 (QYH60_04660) rplK 876923..877348 (+) 426 WP_004254643.1 50S ribosomal protein L11 -
  QYH60_RS04665 (QYH60_04665) rplA 877686..878375 (+) 690 WP_004254644.1 50S ribosomal protein L1 -
  QYH60_RS04670 (QYH60_04670) - 878454..878798 (+) 345 WP_004254648.1 hypothetical protein -
  QYH60_RS04675 (QYH60_04675) - 878810..879031 (-) 222 WP_010906257.1 hypothetical protein -
  QYH60_RS04680 (QYH60_04680) - 879044..879445 (-) 402 WP_004254651.1 HIT family protein -
  QYH60_RS04685 (QYH60_04685) - 879724..881529 (+) 1806 WP_058207939.1 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  QYH60_RS04690 (QYH60_04690) pptA 881548..882318 (+) 771 WP_004254655.1 ABC transporter ATP-binding protein Regulator
  QYH60_RS04695 (QYH60_04695) - 882311..883330 (+) 1020 WP_004254656.1 ABC transporter permease -
  QYH60_RS04700 (QYH60_04700) - 883370..883996 (-) 627 WP_017865091.1 copper homeostasis protein CutC -
  QYH60_RS04705 (QYH60_04705) - 884209..885390 (-) 1182 WP_058207938.1 site-specific integrase -
  QYH60_RS04710 (QYH60_04710) - 885481..885786 (-) 306 WP_058207937.1 bacteriocin immunity protein -
  QYH60_RS04715 (QYH60_04715) - 885831..886349 (-) 519 WP_058207936.1 hypothetical protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28472.99 Da        Isoelectric Point: 4.5320

>NTDB_id=778174 QYH60_RS04690 WP_004254655.1 881548..882318(+) (pptA) [Lactococcus lactis subsp. lactis strain KMGR2-43]
MLKVTNLTGGYLGHPVLKDLNFEIKEGELVGLIGLNGAGKSTTIQEIIGLLTPYSGQIELDGLTLQQDLEGYRRKIGFIP
ETPSLYEELTLREHIEVTALAYGISVDLAFERAEKLLETFRLSDKLDWFPVNFSKGMKQKVMIICAFLVEPSLYIVDEPF
MGLDPLAIQDLIDLMIDMKKSGSSILMSTHILSTAEKFCDKFIVLHEGQVVAFGTVEELRTQFNQPKASLDEIYLALTKG
NIPNSKEVVEAGKSNE

Nucleotide


Download         Length: 771 bp        

>NTDB_id=778174 QYH60_RS04690 WP_004254655.1 881548..882318(+) (pptA) [Lactococcus lactis subsp. lactis strain KMGR2-43]
ATGTTAAAAGTAACAAATCTAACAGGTGGCTATTTGGGGCATCCTGTCTTAAAAGACCTTAATTTTGAAATTAAAGAAGG
TGAGTTAGTTGGACTCATTGGTTTAAATGGTGCAGGAAAATCGACGACAATTCAAGAAATTATTGGACTTTTGACTCCTT
ATTCTGGACAAATTGAATTAGACGGCTTAACTTTACAACAAGATTTAGAAGGCTATCGTAGAAAAATTGGTTTCATTCCA
GAAACACCAAGTTTGTATGAAGAATTGACTTTGCGTGAACATATTGAAGTGACAGCTTTAGCTTACGGGATTTCTGTTGA
CTTGGCTTTTGAACGTGCTGAAAAATTATTAGAAACTTTCCGCTTGAGTGATAAATTAGATTGGTTCCCTGTGAATTTTT
CAAAAGGGATGAAACAAAAAGTGATGATTATCTGCGCATTCTTAGTGGAACCTTCGCTCTATATTGTTGATGAACCTTTT
ATGGGACTTGACCCGCTTGCGATTCAGGATTTGATTGACTTGATGATTGACATGAAAAAATCAGGAAGTTCGATTTTAAT
GAGTACACATATCTTGTCCACAGCTGAAAAATTCTGTGATAAATTTATTGTTTTGCATGAAGGTCAAGTTGTTGCTTTTG
GAACAGTAGAAGAATTGCGTACTCAATTTAATCAGCCTAAGGCAAGTTTAGATGAAATTTATCTTGCCTTAACAAAAGGA
AATATTCCAAACTCTAAAGAAGTTGTAGAGGCAGGAAAGTCAAATGAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CE51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

67.355

94.531

0.637
  pptA Streptococcus thermophilus LMD-9

66.942

94.531

0.633