Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QYH60_RS02460 Genome accession   NZ_CP129292
Coordinates   488613..489368 (-) Length   251 a.a.
NCBI ID   WP_301401260.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain KMGR2-43     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 483613..494368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH60_RS02440 (QYH60_02440) - 484072..485052 (+) 981 WP_010905076.1 alpha-ketoacid dehydrogenase subunit beta -
  QYH60_RS02445 (QYH60_02445) - 485045..486643 (+) 1599 WP_021723187.1 2-oxo acid dehydrogenase subunit E2 -
  QYH60_RS02450 (QYH60_02450) lpdA 486837..488255 (+) 1419 WP_010905074.1 dihydrolipoyl dehydrogenase -
  QYH60_RS02455 (QYH60_02455) - 488326..488499 (-) 174 WP_021214949.1 helix-turn-helix transcriptional regulator -
  QYH60_RS02460 (QYH60_02460) recO 488613..489368 (-) 756 WP_301401260.1 DNA repair protein RecO Machinery gene
  QYH60_RS02465 (QYH60_02465) - 489467..490642 (-) 1176 WP_012896922.1 pyridoxal phosphate-dependent aminotransferase -
  QYH60_RS02475 (QYH60_02475) - 491107..491627 (-) 521 Protein_475 N-acetyltransferase -
  QYH60_RS02480 (QYH60_02480) - 491837..493459 (+) 1623 WP_039114392.1 SulP family inorganic anion transporter -
  QYH60_RS02485 (QYH60_02485) - 493540..493782 (-) 243 WP_021723183.1 TM2 domain-containing protein -
  QYH60_RS02490 (QYH60_02490) - 493859..494308 (-) 450 WP_039114390.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28631.83 Da        Isoelectric Point: 6.2346

>NTDB_id=778149 QYH60_RS02460 WP_301401260.1 488613..489368(-) (recO) [Lactococcus lactis subsp. lactis strain KMGR2-43]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDGYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=778149 QYH60_RS02460 WP_301401260.1 488613..489368(-) (recO) [Lactococcus lactis subsp. lactis strain KMGR2-43]
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCGCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCCATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGGATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-72)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.065

98.008

0.53