Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   QYH60_RS00310 Genome accession   NZ_CP129292
Coordinates   53766..54482 (+) Length   238 a.a.
NCBI ID   WP_301401189.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain KMGR2-43     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 48766..59482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH60_RS00295 (QYH60_00295) - 49091..51400 (-) 2310 WP_301401187.1 glycoside hydrolase family 65 protein -
  QYH60_RS00300 (QYH60_00300) - 51468..53033 (-) 1566 WP_025016545.1 PTS transporter subunit EIIC -
  QYH60_RS00305 (QYH60_00305) - 53170..53655 (-) 486 WP_301401188.1 PTS glucose transporter subunit IIA -
  QYH60_RS00310 (QYH60_00310) treR 53766..54482 (+) 717 WP_301401189.1 trehalose operon repressor Regulator
  QYH60_RS00315 (QYH60_00315) glmM 54558..55916 (-) 1359 WP_003131539.1 phosphoglucosamine mutase -
  QYH60_RS00320 (QYH60_00320) - 55962..56921 (-) 960 WP_012897245.1 CdaR family protein -
  QYH60_RS00325 (QYH60_00325) cdaA 56911..57789 (-) 879 WP_003131542.1 diadenylate cyclase CdaA -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27842.48 Da        Isoelectric Point: 6.3088

>NTDB_id=778133 QYH60_RS00310 WP_301401189.1 53766..54482(+) (treR) [Lactococcus lactis subsp. lactis strain KMGR2-43]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSANYESSRSTVRQALKILEEKGLIQRRHGYGSIVLANDRLLFPISGLT
SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY
DYLEDTLGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=778133 QYH60_RS00310 WP_301401189.1 53766..54482(+) (treR) [Lactococcus lactis subsp. lactis strain KMGR2-43]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
AAGTGAAAATGAGCTCTCTGCTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTAACGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCGATTTGAAAGACTTGAAATTAACCC
TAAACTTTCAGAAACAACTGGTTTTGCCGTTGGTGAACACGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAACTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGATACTCTAGGGCTTGATATTGCCTATGCTCAAAAGGAAGTCACGATTGATTTTGCCTGCGAAGATGA
CTTTAAATATCTTGACTTAAATCCCAAAGACCATCATGTCGTTTCTGTCAAATCCCATGTTTATCTTGCTGATAATACTC
TTTTTCAGTATACTGAATCTCGACATCAAGTCGACCGCTTTCGTTTCACAGAATTTGCCAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(89-228)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

46.414

99.58

0.462