Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QYH60_RS00085 Genome accession   NZ_CP129292
Coordinates   11191..11832 (+) Length   213 a.a.
NCBI ID   WP_058208080.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain KMGR2-43     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6191..16832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH60_RS00055 (QYH60_00055) - 7339..7530 (-) 192 WP_003131739.1 DNA-directed RNA polymerase subunit beta -
  QYH60_RS00060 (QYH60_00060) murA 7530..8828 (-) 1299 WP_301536173.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QYH60_RS00065 (QYH60_00065) - 8922..9701 (-) 780 WP_058208079.1 inositol monophosphatase family protein -
  QYH60_RS00070 (QYH60_00070) - 9667..9948 (-) 282 WP_003131743.1 UPF0223 family protein -
  QYH60_RS00075 (QYH60_00075) spx 10040..10426 (-) 387 WP_010905435.1 transcriptional regulator Spx -
  QYH60_RS00080 (QYH60_00080) - 10586..11110 (-) 525 WP_010905434.1 DUF1273 domain-containing protein -
  QYH60_RS00085 (QYH60_00085) recU 11191..11832 (+) 642 WP_058208080.1 Holliday junction resolvase RecU Machinery gene
  QYH60_RS00090 (QYH60_00090) - 11900..13894 (+) 1995 WP_301536174.1 transglycosylase domain-containing protein -
  QYH60_RS00095 (QYH60_00095) - 13895..14527 (+) 633 WP_003131748.1 MBL fold metallo-hydrolase -
  QYH60_RS00100 (QYH60_00100) - 14566..15651 (-) 1086 WP_301401179.1 LysM peptidoglycan-binding domain-containing protein -
  QYH60_RS00105 (QYH60_00105) cysK 15869..16801 (+) 933 WP_003131750.1 cysteine synthase A -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24341.07 Da        Isoelectric Point: 10.0678

>NTDB_id=778131 QYH60_RS00085 WP_058208080.1 11191..11832(+) (recU) [Lactococcus lactis subsp. lactis strain KMGR2-43]
MVNYPNGRSQAYSTVPKKKKSLTELSVTKKSTSKTKGMVAFGKRGMNFEAEINATNEYYLSRGLAVIHKKPTPIQIVKVD
YPQRSRAKITEAYFRQASTTDYSGVYKGHYIDFEAKETQQKTVFPLKNFHEHQIVHMSNVLAQGGIAFVLLHFARLNETY
LLPSSCLITFYYEKGGLKSIPLSHIRENGYKIETNHIPRIPYLEIVNKLCEVQ

Nucleotide


Download         Length: 642 bp        

>NTDB_id=778131 QYH60_RS00085 WP_058208080.1 11191..11832(+) (recU) [Lactococcus lactis subsp. lactis strain KMGR2-43]
ATGGTTAATTATCCTAATGGAAGGTCGCAAGCTTACAGCACTGTTCCTAAGAAAAAAAAATCACTGACAGAGCTGTCAGT
AACTAAAAAAAGCACCTCAAAAACCAAAGGGATGGTTGCCTTCGGGAAGCGGGGAATGAATTTTGAAGCTGAAATTAATG
CAACAAATGAGTATTATCTTTCTCGTGGACTTGCAGTTATCCACAAAAAGCCAACACCAATTCAAATCGTTAAAGTAGAT
TATCCACAAAGGAGTCGTGCAAAAATTACAGAAGCTTACTTCAGGCAAGCATCTACTACTGACTACTCTGGAGTCTATAA
AGGTCACTACATCGACTTTGAAGCAAAGGAAACACAGCAAAAAACTGTTTTCCCTCTAAAAAATTTCCATGAGCATCAAA
TTGTTCACATGAGTAATGTTCTCGCTCAAGGGGGAATTGCTTTTGTCCTCTTGCACTTTGCAAGGTTAAATGAAACATAT
CTTCTTCCATCTTCGTGTTTGATTACTTTTTATTACGAAAAAGGCGGTTTAAAGTCAATTCCGCTTTCTCATATTCGCGA
AAATGGCTATAAAATTGAAACGAACCACATTCCTAGAATTCCTTATCTAGAAATTGTGAATAAACTTTGTGAGGTACAGT
AA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(44-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

47.393

99.061

0.469