Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QYN11_RS01930 Genome accession   NZ_CP129279
Coordinates   415896..416573 (-) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain GZM7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 410896..421573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYN11_RS01915 (QYN11_01910) chiA 412263..414956 (+) 2694 WP_000773151.1 bifunctional chitinase/lysozyme -
  QYN11_RS01920 (QYN11_01915) bfd 415125..415319 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  QYN11_RS01925 (QYN11_01920) bfr 415391..415867 (+) 477 WP_000675504.1 bacterioferritin -
  QYN11_RS01930 (QYN11_01925) pilD 415896..416573 (-) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  QYN11_RS01935 (QYN11_01930) gspM 416573..417034 (-) 462 WP_001295161.1 type II secretion system protein GspM -
  QYN11_RS01940 (QYN11_01935) gspL 417031..418194 (-) 1164 WP_001115230.1 type II secretion system protein GspL -
  QYN11_RS01945 (QYN11_01940) gspK 418209..419192 (-) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  QYN11_RS01950 (QYN11_01945) gspJ 419185..419772 (-) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  QYN11_RS01955 (QYN11_01950) gspI 419765..420142 (-) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  QYN11_RS01960 (QYN11_01955) gspH 420139..420648 (-) 510 WP_001076048.1 type II secretion system minor pseudopilin GspH -
  QYN11_RS01965 (QYN11_01960) gspG 420656..421093 (-) 438 WP_001202880.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=778061 QYN11_RS01930 WP_000178161.1 415896..416573(-) (pilD) [Escherichia coli strain GZM7]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=778061 QYN11_RS01930 WP_000178161.1 415896..416573(-) (pilD) [Escherichia coli strain GZM7]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378