Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QYN12_RS18015 Genome accession   NZ_CP129272
Coordinates   3634921..3635526 (-) Length   201 a.a.
NCBI ID   WP_001195017.1    Uniprot ID   -
Organism   Escherichia coli strain G12     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3629921..3640526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYN12_RS17995 (QYN12_17995) aes 3630062..3631021 (+) 960 WP_000801797.1 acetyl esterase -
  QYN12_RS18000 (QYN12_18000) hemH 3631018..3631980 (-) 963 WP_001250105.1 ferrochelatase -
  QYN12_RS18005 (QYN12_18005) adk 3632112..3632756 (-) 645 WP_001220233.1 adenylate kinase -
  QYN12_RS18010 (QYN12_18010) htpG 3632937..3634811 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QYN12_RS18015 (QYN12_18015) recR 3634921..3635526 (-) 606 WP_001195017.1 recombination mediator RecR Machinery gene
  QYN12_RS18020 (QYN12_18020) ybaB 3635526..3635855 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QYN12_RS18025 (QYN12_18025) dnaX 3635908..3637839 (-) 1932 WP_000122011.1 DNA polymerase III subunit gamma/tau -
  QYN12_RS18030 (QYN12_18030) apt 3637968..3638519 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QYN12_RS18035 (QYN12_18035) ybaN 3638672..3639049 (-) 378 WP_001188905.1 DUF454 family protein -
  QYN12_RS18040 (QYN12_18040) priC 3639119..3639646 (+) 528 WP_000844858.1 primosomal replication protein N'' -
  QYN12_RS18045 (QYN12_18045) rsmS 3639660..3639821 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  QYN12_RS18050 (QYN12_18050) - 3639874..3639972 (-) 99 Protein_3536 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21972.01 Da        Isoelectric Point: 5.0751

>NTDB_id=778024 QYN12_RS18015 WP_001195017.1 3634921..3635526(-) (recR) [Escherichia coli strain G12]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEHEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=778024 QYN12_RS18015 WP_001195017.1 3634921..3635526(-) (recR) [Escherichia coli strain G12]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACACGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.005

0.438